read_gmt.RdImports specified GMT file as a list
read_gmt(gmt_file_name)List of modules, each associated with a character vector containing genes constituting the module.
read_gmt(system.file("extdata", "h.all.v7.4.symbols.gmt", package = "MAYA"))
#> $HALLMARK_TNFA_SIGNALING_VIA_NFKB
#> [1] "JUNB" "CXCL2" "ATF3" "NFKBIA" "TNFAIP3" "PTGS2"
#> [7] "CXCL1" "IER3" "CD83" "CCL20" "CXCL3" "MAFF"
#> [13] "NFKB2" "TNFAIP2" "HBEGF" "KLF6" "BIRC3" "PLAUR"
#> [19] "ZFP36" "ICAM1" "JUN" "EGR3" "IL1B" "BCL2A1"
#> [25] "PPP1R15A" "ZC3H12A" "SOD2" "NR4A2" "IL1A" "RELB"
#> [31] "TRAF1" "BTG2" "DUSP1" "MAP3K8" "ETS2" "F3"
#> [37] "SDC4" "EGR1" "IL6" "TNF" "KDM6B" "NFKB1"
#> [43] "LIF" "PTX3" "FOSL1" "NR4A1" "JAG1" "CCL4"
#> [49] "GCH1" "CCL2" "RCAN1" "DUSP2" "EHD1" "IER2"
#> [55] "REL" "CFLAR" "RIPK2" "NFKBIE" "NR4A3" "PHLDA1"
#> [61] "IER5" "TNFSF9" "GEM" "GADD45A" "CXCL10" "PLK2"
#> [67] "BHLHE40" "EGR2" "SOCS3" "SLC2A6" "PTGER4" "DUSP5"
#> [73] "SERPINB2" "NFIL3" "SERPINE1" "TRIB1" "TIPARP" "RELA"
#> [79] "BIRC2" "CXCL6" "LITAF" "TNFAIP6" "CD44" "INHBA"
#> [85] "PLAU" "MYC" "TNFRSF9" "SGK1" "TNIP1" "NAMPT"
#> [91] "FOSL2" "PNRC1" "ID2" "CD69" "IL7R" "EFNA1"
#> [97] "PHLDA2" "PFKFB3" "CCL5" "YRDC" "IFNGR2" "SQSTM1"
#> [103] "BTG3" "GADD45B" "KYNU" "G0S2" "BTG1" "MCL1"
#> [109] "VEGFA" "MAP2K3" "CDKN1A" "CCN1" "TANK" "IFIT2"
#> [115] "IL18" "TUBB2A" "IRF1" "FOS" "OLR1" "RHOB"
#> [121] "AREG" "NINJ1" "ZBTB10" "PLPP3" "KLF4" "CXCL11"
#> [127] "SAT1" "CSF1" "GPR183" "PMEPA1" "PTPRE" "TLR2"
#> [133] "ACKR3" "KLF10" "MARCKS" "LAMB3" "CEBPB" "TRIP10"
#> [139] "F2RL1" "KLF9" "LDLR" "TGIF1" "RNF19B" "DRAM1"
#> [145] "B4GALT1" "DNAJB4" "CSF2" "PDE4B" "SNN" "PLEK"
#> [151] "STAT5A" "DENND5A" "CCND1" "DDX58" "SPHK1" "CD80"
#> [157] "TNFAIP8" "CCNL1" "FUT4" "CCRL2" "SPSB1" "TSC22D1"
#> [163] "B4GALT5" "SIK1" "CLCF1" "NFE2L2" "FOSB" "PER1"
#> [169] "NFAT5" "ATP2B1" "IL12B" "IL6ST" "SLC16A6" "ABCA1"
#> [175] "HES1" "BCL6" "IRS2" "SLC2A3" "CEBPD" "IL23A"
#> [181] "SMAD3" "TAP1" "MSC" "IFIH1" "IL15RA" "TNIP2"
#> [187] "BCL3" "PANX1" "FJX1" "EDN1" "EIF1" "BMP2"
#> [193] "DUSP4" "PDLIM5" "ICOSLG" "GFPT2" "KLF2" "TNC"
#> [199] "SERPINB8" "MXD1"
#>
#> $HALLMARK_HYPOXIA
#> [1] "PGK1" "PDK1" "GBE1" "PFKL" "ALDOA" "ENO2"
#> [7] "PGM1" "NDRG1" "HK2" "ALDOC" "GPI" "MXI1"
#> [13] "SLC2A1" "P4HA1" "ADM" "P4HA2" "ENO1" "PFKP"
#> [19] "AK4" "FAM162A" "PFKFB3" "VEGFA" "BNIP3L" "TPI1"
#> [25] "ERO1A" "KDM3A" "CCNG2" "LDHA" "GYS1" "GAPDH"
#> [31] "BHLHE40" "ANGPTL4" "JUN" "SERPINE1" "LOX" "GCK"
#> [37] "PPFIA4" "MAFF" "DDIT4" "SLC2A3" "IGFBP3" "NFIL3"
#> [43] "FOS" "RBPJ" "HK1" "CITED2" "ISG20" "GALK1"
#> [49] "WSB1" "PYGM" "STC1" "ZNF292" "BTG1" "PLIN2"
#> [55] "CSRP2" "VLDLR" "JMJD6" "EXT1" "F3" "PDK3"
#> [61] "ANKZF1" "UGP2" "ALDOB" "STC2" "ERRFI1" "ENO3"
#> [67] "PNRC1" "HMOX1" "PGF" "GAPDHS" "CHST2" "TMEM45A"
#> [73] "BCAN" "ATF3" "CAV1" "AMPD3" "GPC3" "NDST1"
#> [79] "IRS2" "SAP30" "GAA" "SDC4" "STBD1" "IER3"
#> [85] "PKLR" "IGFBP1" "PLAUR" "CAVIN3" "CCN5" "LARGE1"
#> [91] "NOCT" "S100A4" "RRAGD" "ZFP36" "EGFR" "EDN2"
#> [97] "IDS" "CDKN1A" "RORA" "DUSP1" "MIF" "PPP1R3C"
#> [103] "DPYSL4" "KDELR3" "DTNA" "ADORA2B" "HS3ST1" "CAVIN1"
#> [109] "NR3C1" "KLF6" "GPC4" "CCN1" "TNFAIP3" "CA12"
#> [115] "HEXA" "BGN" "PPP1R15A" "PGM2" "PIM1" "PRDX5"
#> [121] "NAGK" "CDKN1B" "BRS3" "TKTL1" "MT1E" "ATP7A"
#> [127] "MT2A" "SDC3" "TIPARP" "PKP1" "ANXA2" "PGAM2"
#> [133] "DDIT3" "PRKCA" "SLC37A4" "CXCR4" "EFNA3" "CP"
#> [139] "KLF7" "CCN2" "CHST3" "TPD52" "LXN" "B4GALNT2"
#> [145] "PPARGC1A" "BCL2" "GCNT2" "HAS1" "KLHL24" "SCARB1"
#> [151] "SLC25A1" "SDC2" "CASP6" "VHL" "FOXO3" "PDGFB"
#> [157] "B3GALT6" "SLC2A5" "SRPX" "EFNA1" "GLRX" "ACKR3"
#> [163] "PAM" "TGFBI" "DCN" "SIAH2" "PLAC8" "FBP1"
#> [169] "TPST2" "PHKG1" "MYH9" "CDKN1C" "GRHPR" "PCK1"
#> [175] "INHA" "HSPA5" "NDST2" "NEDD4L" "TPBG" "XPNPEP1"
#> [181] "IL6" "SLC6A6" "MAP3K1" "LDHC" "AKAP12" "TES"
#> [187] "KIF5A" "LALBA" "COL5A1" "GPC1" "HDLBP" "ILVBL"
#> [193] "NCAN" "TGM2" "ETS1" "HOXB9" "SELENBP1" "FOSL2"
#> [199] "SULT2B1" "TGFB3"
#>
#> $HALLMARK_CHOLESTEROL_HOMEOSTASIS
#> [1] "FDPS" "CYP51A1" "IDI1" "FDFT1" "DHCR7" "SQLE"
#> [7] "HMGCS1" "NSDHL" "LSS" "MVD" "LDLR" "TM7SF2"
#> [13] "ALDOC" "EBP" "SCD" "PMVK" "MVK" "LPL"
#> [19] "SC5D" "FADS2" "HMGCR" "HSD17B7" "ANXA13" "SREBF2"
#> [25] "PCYT2" "ACSS2" "ATF3" "ADH4" "ETHE1" "ECH1"
#> [31] "CBS" "GUSB" "FASN" "LGALS3" "ATF5" "ANXA5"
#> [37] "TP53INP1" "CHKA" "GSTM2" "ACAT2" "AVPR1A" "PLSCR1"
#> [43] "CLU" "ERRFI1" "TRIB3" "CXCL16" "TNFRSF12A" "ACTG1"
#> [49] "JAG1" "LGMN" "FBXO6" "GPX8" "PNRC1" "ANTXR2"
#> [55] "MAL2" "CD9" "PPARG" "GLDC" "STX5" "STARD4"
#> [61] "CTNNB1" "TMEM97" "NIBAN1" "PDK3" "PLAUR" "SEMA3B"
#> [67] "GNAI1" "ABCA2" "ATXN2" "NFIL3" "ALCAM" "FABP5"
#> [73] "S100A11" "CPEB2"
#>
#> $HALLMARK_MITOTIC_SPINDLE
#> [1] "ARHGEF2" "CLASP1" "KIF11" "KIF23" "ALS2" "ARF6"
#> [7] "MYO9B" "MYH9" "TUBGCP3" "CKAP5" "RACGAP1" "PREX1"
#> [13] "ARHGEF3" "NUMA1" "SPTBN1" "KIF2C" "KIF5B" "TTK"
#> [19] "APC" "CEP250" "PAFAH1B1" "CDC42EP2" "KIF3B" "CCDC88A"
#> [25] "KIF15" "BIRC5" "CNTROB" "NF1" "TSC1" "CDC27"
#> [31] "CNTRL" "TUBGCP5" "KIF4A" "MAPRE1" "FGD6" "BRCA2"
#> [37] "PLK1" "RASA1" "NEK2" "WASF1" "TOP2A" "TRIO"
#> [43] "ARHGEF11" "KATNB1" "PRC1" "ANLN" "CDK5RAP2" "SMC3"
#> [49] "TUBGCP2" "ESPL1" "MAP1S" "ARHGAP27" "DOCK4" "SAC3D1"
#> [55] "INCENP" "ARHGAP5" "GSN" "NET1" "LRPPRC" "RABGAP1"
#> [61] "FLNB" "ARAP3" "FGD4" "ABR" "CENPJ" "NCK1"
#> [67] "CENPF" "KIF20B" "WASF2" "MYH10" "CENPE" "CYTH2"
#> [73] "MID1" "KLC1" "MARK4" "ARL8A" "CEP57" "UXT"
#> [79] "ARHGAP4" "CDC42EP4" "SASS6" "LATS1" "OPHN1" "WASL"
#> [85] "MAP3K11" "SOS1" "ABL1" "TIAM1" "KIF1B" "ITSN1"
#> [91] "SHROOM1" "NCK2" "DLGAP5" "BCR" "RANBP9" "EPB41L2"
#> [97] "SEPTIN9" "KATNA1" "TUBD1" "TPX2" "KIF3C" "SHROOM2"
#> [103] "TUBGCP6" "SPTAN1" "PALLD" "ARFIP2" "KNTC1" "HOOK3"
#> [109] "SUN2" "MID1IP1" "DLG1" "FLNA" "ARHGAP10" "CDC42BPA"
#> [115] "ARHGEF12" "MARCKS" "NIN" "PCM1" "RALBP1" "EZR"
#> [121] "SSH2" "CDK1" "RAB3GAP1" "FARP1" "SYNPO" "RHOF"
#> [127] "ECT2" "EPB41" "RAPGEF6" "KIF22" "PCGF5" "STAU1"
#> [133] "ARHGDIA" "AURKA" "FBXO5" "NUSAP1" "PXN" "BCAR1"
#> [139] "CD2AP" "AKAP13" "HDAC6" "CEP131" "LLGL1" "ATG4B"
#> [145] "PCNT" "ALMS1" "KPTN" "DST" "KIFAP3" "PPP4R2"
#> [151] "ARHGAP29" "RASAL2" "CCNB2" "PIF1" "RASA2" "NEDD9"
#> [157] "SMC1A" "ACTN4" "PKD2" "CLIP2" "CDC42" "NDC80"
#> [163] "TLK1" "TAOK2" "TBCD" "CAPZB" "DOCK2" "CTTN"
#> [169] "SMC4" "ARFGEF1" "TUBA4A" "LMNB1" "ABI1" "ROCK1"
#> [175] "CEP192" "BUB1" "GEMIN4" "PLEKHG2" "RICTOR" "BCL2L11"
#> [181] "DYNC1H1" "FSCN1" "ARHGEF7" "DYNLL2" "MYO1E" "BIN1"
#> [187] "NOTCH2" "RFC1" "PDLIM5" "RHOT2" "SORBS2" "CDC42EP1"
#> [193] "VCL" "CLIP1" "STK38L" "YWHAE" "RAPGEF5" "CEP72"
#> [199] "CSNK1D"
#>
#> $HALLMARK_WNT_BETA_CATENIN_SIGNALING
#> [1] "MYC" "CTNNB1" "JAG2" "NOTCH1" "DLL1" "AXIN2" "PSEN2" "FZD1"
#> [9] "NOTCH4" "LEF1" "AXIN1" "NKD1" "WNT5B" "CUL1" "JAG1" "MAML1"
#> [17] "KAT2A" "GNAI1" "WNT6" "PTCH1" "NCOR2" "DKK4" "HDAC2" "DKK1"
#> [25] "TCF7" "WNT1" "NUMB" "ADAM17" "DVL2" "PPARD" "NCSTN" "HDAC5"
#> [33] "CCND2" "FRAT1" "CSNK1E" "RBPJ" "FZD8" "TP53" "SKP2" "HEY2"
#> [41] "HEY1" "HDAC11"
#>
#> $HALLMARK_TGF_BETA_SIGNALING
#> [1] "TGFBR1" "SMAD7" "TGFB1" "SMURF2" "SMURF1" "BMPR2"
#> [7] "SKIL" "SKI" "ACVR1" "PMEPA1" "NCOR2" "SERPINE1"
#> [13] "JUNB" "SMAD1" "SMAD6" "PPP1R15A" "TGIF1" "FURIN"
#> [19] "SMAD3" "FKBP1A" "MAP3K7" "BMPR1A" "CTNNB1" "HIPK2"
#> [25] "KLF10" "BMP2" "ENG" "APC" "PPM1A" "XIAP"
#> [31] "CDH1" "ID1" "LEFTY2" "CDKN1C" "TRIM33" "RAB31"
#> [37] "TJP1" "SLC20A1" "CDK9" "ID3" "NOG" "ARID4B"
#> [43] "IFNGR2" "ID2" "PPP1CA" "SPTBN1" "WWTR1" "BCAR3"
#> [49] "THBS1" "FNTA" "HDAC1" "UBE2D3" "LTBP2" "RHOA"
#>
#> $HALLMARK_IL6_JAK_STAT3_SIGNALING
#> [1] "IL4R" "IL6ST" "STAT1" "IL1R1" "CSF2RB" "SOCS3"
#> [7] "STAT3" "OSMR" "IL2RG" "IFNGR1" "TYK2" "IL13RA1"
#> [13] "TLR2" "IFNGR2" "IL10RB" "IL6" "IL1R2" "IL3RA"
#> [19] "IFNAR1" "TNFRSF1A" "MYD88" "ACVR1B" "CSF3R" "ITGB3"
#> [25] "REG1A" "CXCL1" "A2M" "CSF2RA" "IL15RA" "IRF9"
#> [31] "PDGFC" "HAX1" "BAK1" "EBI3" "INHBE" "CRLF2"
#> [37] "TNFRSF1B" "CD14" "PTPN1" "PTPN2" "IL1B" "CSF1"
#> [43] "IL18R1" "TNF" "PF4" "CXCL13" "LTBR" "FAS"
#> [49] "IL17RA" "CXCL10" "IL9R" "STAM2" "TNFRSF12A" "STAT2"
#> [55] "HMOX1" "LEPR" "CBL" "CD9" "CXCL3" "TGFB1"
#> [61] "MAP3K8" "ITGA4" "CD38" "JUN" "SOCS1" "ACVRL1"
#> [67] "PIM1" "TNFRSF21" "PIK3R5" "GRB2" "IRF1" "DNTT"
#> [73] "CSF2" "IL2RA" "PTPN11" "IL12RB1" "CCR1" "CNTFR"
#> [79] "PLA2G2A" "CXCL9" "CD44" "IL7" "CXCL11" "CCL7"
#> [85] "LTB" "IL17RB" "CD36"
#>
#> $HALLMARK_DNA_REPAIR
#> [1] "POLR2H" "POLR2A" "POLR2G" "POLR2E" "POLR2J" "POLR2F" "POLR2C"
#> [8] "POLR2K" "GTF2H3" "POLR2D" "ERCC3" "DDB2" "POLR1C" "XPC"
#> [15] "PCNA" "POLR2I" "SUPT4H1" "POLD3" "POLR3GL" "POLR3C" "GTF2B"
#> [22] "POLR1D" "NCBP2" "NELFE" "GTF2F1" "ERCC5" "LIG1" "ERCC1"
#> [29] "ERCC4" "POLD4" "NELFB" "RFC2" "ELL" "TAF10" "RRM2B"
#> [36] "SUPT5H" "RPA3" "SNAPC5" "SSRP1" "RFC3" "RPA2" "ELOA"
#> [43] "TAF12" "NELFCD" "TAF13" "TAF6" "TAF9" "GTF2A2" "VPS37D"
#> [50] "NME1" "RNMT" "ERCC2" "POLE4" "VPS37B" "NT5C3A" "SNAPC4"
#> [57] "AAAS" "POLR1H" "RFC4" "ITPA" "POM121" "BRF2" "RFC5"
#> [64] "SAC3D1" "CLP1" "NME4" "PRIM1" "VPS28" "TSG101" "USP11"
#> [71] "TAF1C" "TARBP2" "POLH" "CETN2" "POLD1" "CANT1" "PDE4B"
#> [78] "DGCR8" "RAD51" "SURF1" "PNP" "ADA" "NME3" "GTF3C5"
#> [85] "NT5C" "AK1" "GTF2H1" "HCLS1" "APRT" "ERCC8" "IMPDH2"
#> [92] "POLB" "SDCBP" "SF3A3" "DAD1" "UPF3B" "GUK1" "TP53"
#> [99] "ADRM1" "SEC61A1" "POLA2" "FEN1" "ZNF707" "NUDT9" "PDE6G"
#> [106] "TYMS" "BCAP31" "DDB1" "NFX1" "RAD52" "ADCY6" "ARL6IP1"
#> [113] "DGUOK" "POLL" "SMAD5" "MPG" "DUT" "POLA1" "AGO4"
#> [120] "RALA" "ZWINT" "BCAM" "TK2" "CSTF3" "GTF2H5" "HPRT1"
#> [127] "BOLA2" "GPX4" "MPC2" "CDA" "ALYREF" "MRPL40" "NPR2"
#> [134] "REV3L" "EDF1" "GSDME" "TMED2" "STX3" "RAE1" "UMPS"
#> [141] "EIF1B" "AK3" "NUDT21" "RBX1" "SRSF6" "GMPR2" "DCTN4"
#> [148] "COX17" "CMPK2" "CCNO"
#>
#> $HALLMARK_G2M_CHECKPOINT
#> [1] "AURKA" "CCNA2" "TOP2A" "CCNB2" "CENPA" "BIRC5"
#> [7] "CDC20" "PLK1" "TTK" "PRC1" "NDC80" "KIF11"
#> [13] "NUSAP1" "CKS2" "KIF2C" "MKI67" "AURKB" "TPX2"
#> [19] "SMC4" "BUB1" "CENPF" "RACGAP1" "CENPE" "KIF23"
#> [25] "UBE2C" "MCM6" "MCM3" "PTTG1" "CDK1" "KIF4A"
#> [31] "ESPL1" "MAD2L1" "NEK2" "KIF22" "HMMR" "KPNA2"
#> [37] "CDKN3" "CDC25A" "H2AX" "CDC25B" "PLK4" "CDC6"
#> [43] "CCNF" "MCM5" "LMNB1" "E2F3" "KIF15" "CHEK1"
#> [49] "UBE2S" "NSD2" "HMGB3" "DBF4" "TACC3" "MCM2"
#> [55] "CDKN2C" "CDKN1B" "FANCC" "NASP" "STAG1" "GINS2"
#> [61] "FBXO5" "POLQ" "EZH2" "RAD21" "STMN1" "SUV39H1"
#> [67] "PRIM2" "E2F1" "CHAF1A" "NOLC1" "GSPT1" "BUB3"
#> [73] "SMC1A" "ILF3" "CDC7" "INCENP" "CKS1B" "EXO1"
#> [79] "H2AZ1" "TFDP1" "CCND1" "KPNB1" "JPT1" "LBR"
#> [85] "HUS1" "KIF20B" "TOP1" "PDS5B" "SRSF1" "STIL"
#> [91] "ABL1" "DTYMK" "CDC27" "BARD1" "ATF5" "CDC45"
#> [97] "ODC1" "XPO1" "SFPQ" "TMPO" "PML" "BRCA2"
#> [103] "CTCF" "KNL1" "KMT5A" "SLC38A1" "TRA2B" "MYBL2"
#> [109] "TROAP" "TENT4A" "CUL3" "MAPK14" "H2BC12" "MYC"
#> [115] "AMD1" "CBX1" "CHMP1A" "DKC1" "YTHDC1" "CCNT1"
#> [121] "TGFB1" "ATRX" "LIG3" "NUP50" "SLC7A5" "RBL1"
#> [127] "NUMA1" "RAD54L" "EFNA5" "PRPF4B" "UCK2" "ARID4A"
#> [133] "CUL1" "UPF1" "DR1" "MNAT1" "SMC2" "RBM14"
#> [139] "RPA2" "SQLE" "ORC6" "CDK4" "POLE" "RASAL2"
#> [145] "HOXC10" "RPS6KA5" "CUL4A" "SLC7A1" "FOXN3" "HMGA1"
#> [151] "SS18" "TRAIP" "PRMT5" "CUL5" "DDX39A" "MARCKS"
#> [157] "PBK" "ORC5" "SAP30" "KATNA1" "HNRNPD" "POLA2"
#> [163] "HIRA" "HIF1A" "SYNCRIP" "TLE3" "NCL" "RAD23B"
#> [169] "E2F2" "EGF" "HMGN2" "SRSF10" "SNRPD1" "CASP8AP2"
#> [175] "SMARCC1" "SLC12A2" "NOTCH2" "TNPO2" "SMAD3" "MAP3K20"
#> [181] "HSPA8" "G3BP1" "PTTG3P" "DMD" "MEIS1" "HNRNPU"
#> [187] "SRSF2" "MT2A" "NUP98" "EWSR1" "KIF5B" "MTF2"
#> [193] "E2F4" "BCL3" "PURA" "MEIS2" "PAFAH1B1" "WRN"
#> [199] "H2AZ2" "ODF2"
#>
#> $HALLMARK_APOPTOSIS
#> [1] "CASP3" "CASP9" "DFFA" "CASP7" "CFLAR" "BIRC3"
#> [7] "PMAIP1" "CASP8" "JUN" "BCL2L11" "MCL1" "IL1B"
#> [13] "SPTAN1" "DIABLO" "BAX" "BIK" "IL1A" "BID"
#> [19] "CDKN1A" "GADD45A" "DDIT3" "CDKN1B" "TNF" "GSN"
#> [25] "TNFSF10" "CASP6" "SQSTM1" "FASLG" "EGR3" "CD44"
#> [31] "FAS" "IL18" "IGFBP6" "PRF1" "DAP" "CCND1"
#> [37] "BTG3" "F2R" "SATB1" "BNIP3L" "CASP4" "TNFRSF12A"
#> [43] "CREBBP" "RHOB" "GPX3" "PDGFRB" "TSPO" "CCND2"
#> [49] "XIAP" "TIMP1" "CTNNB1" "IRF1" "HSPB1" "ADD1"
#> [55] "TIMP2" "BTG2" "TIMP3" "LEF1" "CASP1" "GPX1"
#> [61] "BCL10" "IGF2R" "CDC25B" "AIFM3" "CD38" "PPP3R1"
#> [67] "HGF" "CLU" "ATF3" "LGALS3" "LUM" "LMNA"
#> [73] "GADD45B" "CDK2" "IFNB1" "RETSAT" "SMAD7" "SOD1"
#> [79] "PTK2" "ENO2" "HMOX1" "IER3" "BCL2L10" "CD2"
#> [85] "GCH1" "MMP2" "VDAC2" "TAP1" "PLAT" "IFNGR1"
#> [91] "APP" "BRCA1" "ROCK1" "PSEN1" "DCN" "PSEN2"
#> [97] "SOD2" "BMF" "EREG" "KRT18" "TGFB2" "RELA"
#> [103] "WEE1" "RARA" "CD14" "CD69" "PEA15" "DNAJC3"
#> [109] "CASP2" "CTH" "PLCB2" "BMP2" "HMGB2" "PLPPR4"
#> [115] "H1-0" "TGFBR3" "EBP" "TXNIP" "ANKH" "RHOT2"
#> [121] "CYLD" "GSTM1" "GSR" "BGN" "BCL2L1" "GNA15"
#> [127] "MGMT" "PPT1" "F2" "IL6" "SC5D" "IFITM3"
#> [133] "RNASEL" "EMP1" "CAV1" "DNM1L" "ANXA1" "TOP2A"
#> [139] "ISG20" "SLC20A1" "MADD" "PPP2R5B" "BCAP31" "ERBB3"
#> [145] "NEDD9" "SAT1" "PDCD4" "BCL2L2" "FEZ1" "ERBB2"
#> [151] "DNAJA1" "DAP3" "DPYD" "NEFH" "PAK1" "FDXR"
#> [157] "GPX4" "ETF1" "CCNA1" "GUCY2D" "AVPR1A"
#>
#> $HALLMARK_NOTCH_SIGNALING
#> [1] "JAG1" "NOTCH3" "NOTCH2" "APH1A" "HES1" "CCND1" "FZD1"
#> [8] "PSEN2" "FZD7" "DTX1" "DLL1" "FZD5" "MAML2" "NOTCH1"
#> [15] "PSENEN" "WNT5A" "CUL1" "WNT2" "DTX4" "SAP30" "PPARD"
#> [22] "KAT2A" "HEYL" "SKP1" "RBX1" "TCF7L2" "ARRB1" "LFNG"
#> [29] "PRKCA" "DTX2" "ST3GAL6" "FBXW11"
#>
#> $HALLMARK_ADIPOGENESIS
#> [1] "FABP4" "ADIPOQ" "PPARG" "LIPE" "DGAT1" "LPL"
#> [7] "CPT2" "CD36" "GPAM" "ADIPOR2" "ACAA2" "ETFB"
#> [13] "ACOX1" "ACADM" "HADH" "IDH1" "SORBS1" "ACADS"
#> [19] "UCK1" "SCP2" "DECR1" "CDKN2C" "TALDO1" "TST"
#> [25] "MCCC1" "PGM1" "REEP5" "BCL2L13" "SLC25A10" "ME1"
#> [31] "PHYH" "PIM3" "YWHAG" "NDUFAB1" "GPD2" "ADIG"
#> [37] "ECHS1" "QDPR" "CS" "ECH1" "SLC25A1" "ACADL"
#> [43] "TOB1" "GRPEL1" "CRAT" "GBE1" "CAVIN2" "SCARB1"
#> [49] "PEMT" "CHCHD10" "AK2" "APOE" "UQCR10" "TANK"
#> [55] "ANGPTL4" "ACO2" "FAH" "ACLY" "IFNGR1" "SLC5A6"
#> [61] "JAGN1" "EPHX2" "IDH3G" "GPX3" "ELMOD3" "ORM1"
#> [67] "RETSAT" "ESRRA" "HIBCH" "SUCLG1" "STAT5A" "ITGA7"
#> [73] "MRAP" "PLIN2" "CYC1" "ALDH2" "RNF11" "ALDOA"
#> [79] "SULT1A1" "DDT" "SDHB" "CD151" "SLC27A1" "BCKDHA"
#> [85] "C3" "LEP" "ADCY6" "ELOVL6" "LTC4S" "SPARCL1"
#> [91] "RMDN3" "MTCH2" "SOWAHC" "SLC1A5" "CMPK1" "REEP6"
#> [97] "NDUFA5" "FZD4" "DRAM2" "MGST3" "ATP1B3" "RETN"
#> [103] "STOM" "ESYT1" "GHITM" "DNAJC15" "GADD45A" "VEGFB"
#> [109] "PFKL" "COQ3" "NABP1" "CYP4B1" "PPM1B" "ARAF"
#> [115] "CAVIN1" "COL4A1" "IMMT" "DHRS7" "COL15A1" "NMT1"
#> [121] "COQ5" "LAMA4" "AGPAT3" "BAZ2A" "IDH3A" "LIFR"
#> [127] "PREB" "PTGER3" "GPHN" "PFKFB3" "GPX4" "SSPN"
#> [133] "SQOR" "MTARC2" "DLD" "ITIH5" "CD302" "ATL2"
#> [139] "GPAT4" "LPCAT3" "TKT" "UQCRC1" "CAT" "OMD"
#> [145] "DLAT" "MRPL15" "RIOK3" "RTN3" "CHUK" "G3BP2"
#> [151] "SDHC" "SAMM50" "ARL4A" "SNCG" "PDCD4" "COQ9"
#> [157] "APLP2" "SOD1" "PTCD3" "PHLDB1" "ENPP2" "HSPB8"
#> [163] "AIFM1" "CCNG2" "PPP1R15B" "MDH2" "ABCA1" "COX7B"
#> [169] "MYLK" "COX8A" "DHRS7B" "MIGA2" "MGLL" "ITSN1"
#> [175] "DHCR7" "RREB1" "CMBL" "UBC" "ATP5PO" "PRDX3"
#> [181] "DBT" "NDUFS3" "NKIRAS1" "RAB34" "CIDEA" "UQCRQ"
#> [187] "PEX14" "BCL6" "COX6A1" "DNAJB9" "MAP4K3" "ANGPT1"
#> [193] "UBQLN1" "NDUFB7" "SLC19A1" "ABCB8" "SLC66A3" "POR"
#> [199] "UCP2" "UQCR11"
#>
#> $HALLMARK_ESTROGEN_RESPONSE_EARLY
#> [1] "GREB1" "CA12" "SLC9A3R1" "MYB" "ANXA9" "IGFBP4"
#> [7] "SYBU" "NPY1R" "PDZK1" "NRIP1" "MLPH" "HSPB8"
#> [13] "EGR3" "KRT19" "LRIG1" "KDM4B" "PGR" "RHOBTB3"
#> [19] "TPD52L1" "ELOVL2" "RET" "TPBG" "TFF1" "MAPT"
#> [25] "SCNN1A" "ABAT" "FLNB" "XBP1" "CELSR2" "RAB31"
#> [31] "MYBL1" "MREG" "FAM102A" "MSMB" "STC2" "RETREG1"
#> [37] "SIAH2" "ZNF185" "SLC19A2" "SLC1A4" "FHL2" "BCL2"
#> [43] "PMAIP1" "AREG" "OVOL2" "TSKU" "ADCY9" "RASGRP1"
#> [49] "MUC1" "KAZN" "SLC27A2" "FKBP4" "CXCL12" "TMPRSS3"
#> [55] "RARA" "IL17RB" "CBFA2T3" "TFF3" "UGCG" "CCND1"
#> [61] "SLC22A5" "WFS1" "PTGES" "WWC1" "CCN5" "MYC"
#> [67] "ITPK1" "TMEM164" "ARL3" "MED13L" "SEMA3B" "KRT18"
#> [73] "SLC16A1" "TJP3" "SLC26A2" "FCMR" "SULT2B1" "SNX24"
#> [79] "TFAP2C" "TTC39A" "GJA1" "PRSS23" "OLFM1" "RAPGEFL1"
#> [85] "ASB13" "TIPARP" "ABCA3" "FRK" "DHRS2" "AQP3"
#> [91] "KCNK15" "TGIF2" "FOXC1" "ELF3" "REEP1" "PEX11A"
#> [97] "PODXL" "KLF4" "BAG1" "CELSR1" "PLAAT3" "SLC7A5"
#> [103] "MPPED2" "TIAM1" "CLDN7" "MYOF" "RBBP8" "OLFML3"
#> [109] "GFRA1" "FARP1" "SVIL" "TGM2" "DEPTOR" "CYP26B1"
#> [115] "PAPSS2" "SLC1A1" "DLC1" "JAK2" "AFF1" "KLK10"
#> [121] "P2RY2" "BLVRB" "CISH" "GLA" "ADD3" "PDLIM3"
#> [127] "MINDY1" "FOS" "KRT8" "SLC37A1" "B4GALT1" "CALCR"
#> [133] "ESRP2" "IGF1R" "NBL1" "SFN" "OPN3" "ABHD2"
#> [139] "AR" "SLC39A6" "SYT12" "CD44" "MED24" "BCL11B"
#> [145] "CANT1" "KRT13" "KRT15" "TOB1" "SLC7A2" "LAD1"
#> [151] "TUBB2B" "TBC1D30" "SEC14L2" "ENDOD1" "HR" "SCARB1"
#> [157] "NCOR2" "RHOD" "INPP5F" "PPIF" "DHRS3" "FDFT1"
#> [163] "GAB2" "UNC119" "KLF10" "HES1" "FKBP5" "SLC2A1"
#> [169] "AMFR" "NADSYN1" "INHBB" "BHLHE40" "CALB2" "FASN"
#> [175] "CHPT1" "MYBBP1A" "ELOVL5" "DYNLT3" "ABLIM1" "SOX3"
#> [181] "SLC24A3" "RAB17" "MAST4" "KCNK5" "ELF1" "RPS6KA2"
#> [187] "ISG20L2" "IL6ST" "SYNGR1" "SH3BP5" "ALDH3B1" "THSD4"
#> [193] "CLIC3" "NXT1" "NAV2" "RRP12" "ADCY1" "DHCR7"
#> [199] "MICB" "AKAP1"
#>
#> $HALLMARK_ESTROGEN_RESPONSE_LATE
#> [1] "TFF1" "SLC9A3R1" "TPD52L1" "PRSS23" "CA12"
#> [6] "PDZK1" "ANXA9" "CELSR2" "TJP3" "PGR"
#> [11] "RET" "MYB" "TPBG" "EGR3" "ARL3"
#> [16] "OLFM1" "NPY1R" "SCNN1A" "XBP1" "AREG"
#> [21] "IL17RB" "NRIP1" "ASS1" "TFF3" "FKBP4"
#> [26] "SLC27A2" "SEMA3B" "GPER1" "LLGL2" "AGR2"
#> [31] "KRT19" "CCN5" "BLVRB" "FLNB" "PDCD4"
#> [36] "CALCR" "IGFBP4" "DNAJC12" "TIAM1" "TSPAN13"
#> [41] "CXCL12" "RAB31" "PKP3" "CYP26B1" "FKBP5"
#> [46] "SIAH2" "ISG20" "TMPRSS3" "SERPINA3" "WFS1"
#> [51] "MAPT" "PDLIM3" "RBBP8" "GJB3" "PRLR"
#> [56] "SLC1A4" "FOS" "PLAAT3" "SLC7A5" "SERPINA5"
#> [61] "IMPA2" "DHCR7" "MYOF" "CDH1" "EMP2"
#> [66] "OVOL2" "DLG5" "SOX3" "CHPT1" "KLK10"
#> [71] "ELOVL5" "RAPGEFL1" "JAK2" "SLC26A2" "SLC22A5"
#> [76] "ITPK1" "PCP4" "PAPSS2" "NAB2" "FAM102A"
#> [81] "BCL2" "LSR" "CACNA2D2" "CA2" "ASCL1"
#> [86] "ACOX2" "CISH" "GLA" "PTGES" "PERP"
#> [91] "OPN3" "KRT13" "HSPB8" "UGDH" "CLIC3"
#> [96] "KLK11" "PLAC1" "ABHD2" "SCARB1" "DCXR"
#> [101] "CCND1" "SFN" "ABCA3" "SULT2B1" "CCNA1"
#> [106] "STIL" "MICB" "ZFP36" "CAV1" "NBL1"
#> [111] "CD44" "HR" "HOMER2" "BTG3" "GAL"
#> [116] "ETFB" "BAG1" "FRK" "SLC16A1" "AFF1"
#> [121] "TFAP2C" "IGSF1" "HPRT1" "CDC6" "FARP1"
#> [126] "AMFR" "DHRS2" "NXT1" "S100A9" "SLC29A1"
#> [131] "SLC24A3" "FOXC1" "KIF20A" "TOB1" "FDFT1"
#> [136] "DNAJC1" "TPSAB1" "GFUS" "FGFR3" "SGK1"
#> [141] "ID2" "GALE" "BATF" "MAPK13" "FABP5"
#> [146] "MEST" "JAK1" "CYP4F11" "KCNK5" "CPE"
#> [151] "XRCC3" "CXCL14" "SCUBE2" "CDC20" "IL6ST"
#> [156] "GINS2" "TRIM29" "UNC13B" "LAMC2" "LARGE1"
#> [161] "SLC2A8" "PLXNB1" "PRKAR2B" "RPS6KA2" "HSPA4L"
#> [166] "TFPI2" "SERPINA1" "TNNC1" "HMGCS2" "ALDH3A2"
#> [171] "CD9" "IDH2" "SORD" "MDK" "ALDH3B1"
#> [176] "PTGER3" "RABEP1" "KLF4" "PPIF" "SNX10"
#> [181] "METTL3" "PLK4" "COX6C" "ST14" "NCOR2"
#> [186] "MOCS2" "NMU" "TH" "RNASEH2A" "CHST8"
#> [191] "TST" "TOP2A" "CKB" "LTF" "DUSP2"
#> [196] "PTPN6" "ATP2B4" "ST6GALNAC2" "ADD3" "DYNLT3"
#>
#> $HALLMARK_ANDROGEN_RESPONSE
#> [1] "KLK3" "KLK2" "ACSL3" "PIAS1" "CAMKK2" "NKX3-1"
#> [7] "TMPRSS2" "APPBP2" "CENPN" "BMPR1B" "MAF" "FADS1"
#> [13] "ZBTB10" "HMGCR" "SPCS3" "INSIG1" "NGLY1" "UBE2J1"
#> [19] "ELK4" "ABCC4" "ELOVL5" "ALDH1A3" "AZGP1" "ABHD2"
#> [25] "SAT1" "DBI" "DHCR24" "SORD" "STK39" "TPD52"
#> [31] "IDI1" "B2M" "MAP7" "DNAJB9" "FKBP5" "HERC3"
#> [37] "PGM3" "HOMER2" "ELL2" "UAP1" "SEC24D" "LMAN1"
#> [43] "PMEPA1" "INPP4B" "RRP12" "SELENOP" "NDRG1" "KRT19"
#> [49] "ITGAV" "B4GALT1" "MAK" "SPDEF" "GSR" "KRT8"
#> [55] "LIFR" "PLPP1" "STEAP4" "GUCY1A1" "SRP19" "CCND3"
#> [61] "IQGAP2" "RAB4A" "SLC26A2" "SMS" "ZMIZ1" "SGK1"
#> [67] "MERTK" "HPGD" "ANKH" "GNAI3" "SRF" "SLC38A2"
#> [73] "HMGCS1" "ARID5B" "CDC14B" "TNFAIP8" "XRCC5" "GPD1L"
#> [79] "ACTN1" "RPS6KA3" "TSC22D1" "PDLIM5" "TMEM50A" "ADAMTS1"
#> [85] "NCOA4" "AKAP12" "SCD" "PTK2B" "CDK6" "ADRM1"
#> [91] "H1-0" "HSD17B14" "VAPA" "CCND1" "XRCC6" "MYL12A"
#> [97] "UBE2I" "PTPN21" "AKT1" "PA2G4"
#>
#> $HALLMARK_MYOGENESIS
#> [1] "ACTA1" "TNNI2" "MYL1" "TNNC1" "TNNC2" "MYH3"
#> [7] "MYLPF" "TNNT3" "TNNT2" "CASQ2" "ACTC1" "MYOM1"
#> [13] "MYL4" "MYBPH" "MYH7" "MYH8" "ACTN2" "TNNI1"
#> [19] "CRYAB" "SGCG" "HRC" "TNNT1" "DES" "MYOZ1"
#> [25] "RYR1" "CSRP3" "ADAM12" "ATP2A1" "CKM" "SVIL"
#> [31] "MYOM2" "MYL6B" "TPM2" "MYL2" "CKMT2" "BIN1"
#> [37] "MYH1" "ENO3" "FLII" "FXYD1" "TPM3" "DMD"
#> [43] "IGFBP3" "CHRNB1" "SPEG" "FHL1" "ACTN3" "TCAP"
#> [49] "MYLK" "MYL3" "PYGM" "LDB3" "COX6A2" "FABP3"
#> [55] "MYL7" "ITGB5" "CHRNA1" "SSPN" "COL3A1" "KCNH1"
#> [61] "GJA5" "MYF6" "MYH2" "MAPK12" "PGAM2" "MYOG"
#> [67] "MYH4" "AEBP1" "HBEGF" "MEF2C" "NOS1" "CNN3"
#> [73] "IGFBP7" "CACNA1H" "GSN" "CACNG1" "PPFIA4" "MB"
#> [79] "SPHK1" "SCHIP1" "MEF2D" "SMTN" "CDKN1A" "GAA"
#> [85] "TPD52L1" "HSPB2" "SGCA" "BDKRB2" "COX7A1" "COL4A2"
#> [91] "PLXNB2" "CTF1" "COL15A1" "KCNH2" "AGRN" "MYO1C"
#> [97] "SIRT2" "SGCD" "SORBS1" "VIPR1" "FGF2" "FKBP1B"
#> [103] "TEAD4" "CASQ1" "KLF5" "PDLIM7" "AK1" "TAGLN"
#> [109] "RIT1" "MEF2A" "ANKRD2" "AKT2" "LAMA2" "DENND2B"
#> [115] "IFRD1" "NCAM1" "SYNGR2" "PICK1" "COL6A3" "CRAT"
#> [121] "DMPK" "MYH11" "MYH9" "IGF1" "CKB" "FST"
#> [127] "GPX3" "PVALB" "PTP4A3" "ITGB1" "HSPB8" "ACHE"
#> [133] "CHRNG" "PKIA" "NAV2" "HDAC5" "ATP6AP1" "CLU"
#> [139] "ACSL1" "COL1A1" "MRAS" "PDE4DIP" "AGL" "ERBB3"
#> [145] "GABARAPL2" "CAV3" "BHLHE40" "PPP1R3C" "LARGE1" "LPIN1"
#> [151] "CDH13" "NQO1" "PRNP" "PSEN2" "DAPK2" "LSP1"
#> [157] "SLC6A8" "REEP1" "EIF4A2" "SH2B1" "MYBPC3" "ITGA7"
#> [163] "SPTAN1" "SORBS3" "PC" "SCD" "GNAO1" "STC2"
#> [169] "CFD" "RB1" "BAG1" "ABLIM1" "PTGIS" "MAPRE3"
#> [175] "OCEL1" "SH3BGR" "NOTCH1" "TSC2" "TGFB1" "FDPS"
#> [181] "CAMK2B" "EPHB3" "GADD45B" "APP" "APLNR" "ITGB4"
#> [187] "SOD3" "FOXO4" "EFS" "PFKM" "COL6A2" "DTNA"
#> [193] "KIFC3" "SPARC" "SPDEF" "SLN" "WWTR1" "CD36"
#> [199] "ADCY9" "APOD"
#>
#> $HALLMARK_PROTEIN_SECRETION
#> [1] "ARCN1" "TMED10" "COPB2" "RAB14" "ATP7A" "COPB1"
#> [7] "LAMP2" "EGFR" "IGF2R" "COPE" "PPT1" "AP3S1"
#> [13] "BET1" "CLCN3" "AP2S1" "CLTC" "AP2M1" "RER1"
#> [19] "KIF1B" "ARF1" "OCRL" "ICA1" "MON2" "ARFGEF2"
#> [25] "TMED2" "NAPG" "TMX1" "PAM" "SCAMP1" "SH3GL2"
#> [31] "RAB2A" "COG2" "VAMP3" "ERGIC3" "DOP1A" "VAMP4"
#> [37] "VPS4B" "NAPA" "GNAS" "STX7" "SEC22B" "VPS45"
#> [43] "STX16" "YKT6" "SNX2" "ARFGEF1" "CLTA" "CLN5"
#> [49] "M6PR" "SGMS1" "USO1" "TSG101" "DNM1L" "LMAN1"
#> [55] "YIPF6" "ARFIP1" "ANP32E" "TSPAN8" "DST" "SCRN1"
#> [61] "SEC31A" "VAMP7" "SCAMP3" "AP2B1" "RAB22A" "AP3B1"
#> [67] "TPD52" "ATP6V1H" "GBF1" "KRT18" "CAV2" "ATP1A1"
#> [73] "BNIP3" "ZW10" "GALC" "ADAM10" "RAB5A" "GOLGA4"
#> [79] "SEC24D" "AP1G1" "MAPK1" "GOSR2" "RPS6KA3" "STAM"
#> [85] "ABCA1" "SNAP23" "SOD1" "GLA" "ATP6V1B1" "STX12"
#> [91] "CD63" "TOM1L1" "SSPN" "ARFGAP3" "RAB9A" "CTSC"
#>
#> $HALLMARK_INTERFERON_ALPHA_RESPONSE
#> [1] "MX1" "ISG15" "OAS1" "IFIT3" "IFI44" "IFI35"
#> [7] "IRF7" "RSAD2" "IFI44L" "IFITM1" "IFI27" "IRF9"
#> [13] "OASL" "EIF2AK2" "IFIT2" "CXCL10" "TAP1" "SP110"
#> [19] "DDX60" "UBE2L6" "USP18" "PSMB8" "IFIH1" "BST2"
#> [25] "LGALS3BP" "ADAR" "ISG20" "GBP2" "IRF1" "PLSCR1"
#> [31] "PSMB9" "HERC6" "SAMD9" "CMPK2" "IFITM3" "RTP4"
#> [37] "STAT2" "SAMD9L" "LY6E" "IFITM2" "HELZ2" "CXCL11"
#> [43] "TRIM21" "PARP14" "TRIM26" "PARP12" "NMI" "RNF31"
#> [49] "HLA-C" "CASP1" "TRIM14" "TDRD7" "DHX58" "PARP9"
#> [55] "PNPT1" "TRIM25" "PSME1" "WARS1" "EPSTI1" "UBA7"
#> [61] "PSME2" "B2M" "TRIM5" "C1S" "LAP3" "LAMP3"
#> [67] "GBP4" "NCOA7" "TMEM140" "CD74" "GMPR" "PSMA3"
#> [73] "PROCR" "IL7" "IFI30" "IRF2" "CSF1" "IL15"
#> [79] "CNP" "TENT5A" "IL4R" "CMTR1" "CD47" "LPAR6"
#> [85] "MOV10" "CASP8" "TXNIP" "SLC25A28" "SELL" "TRAFD1"
#> [91] "BATF2" "RIPK2" "CCRL2" "NUB1" "OGFR" "MVB12A"
#> [97] "ELF1"
#>
#> $HALLMARK_INTERFERON_GAMMA_RESPONSE
#> [1] "STAT1" "ISG15" "IFIT1" "MX1" "IFIT3" "IFI35"
#> [7] "IRF7" "IFIT2" "OAS2" "TAP1" "EIF2AK2" "RSAD2"
#> [13] "MX2" "IRF1" "OAS3" "TNFSF10" "IRF9" "CXCL10"
#> [19] "IFI44" "BST2" "XAF1" "SP110" "OASL" "PSMB8"
#> [25] "IFI44L" "IFITM3" "DDX60" "LGALS3BP" "GBP4" "IRF8"
#> [31] "PSMB9" "PML" "IFIH1" "UBE2L6" "IFI27" "ADAR"
#> [37] "LY6E" "STAT2" "CXCL9" "IL10RA" "PLA2G4A" "TRIM21"
#> [43] "USP18" "PTGS2" "EPSTI1" "C1S" "DDX58" "IL15"
#> [49] "NLRC5" "NMI" "IDO1" "PSMB10" "CXCL11" "ITGB7"
#> [55] "SAMHD1" "HERC6" "CMPK2" "SAMD9L" "RTP4" "PTPN2"
#> [61] "PARP14" "TNFAIP2" "IFITM2" "PLSCR1" "SOCS1" "CASP1"
#> [67] "ICAM1" "WARS1" "PSME1" "ISG20" "IRF2" "TRIM14"
#> [73] "FCGR1A" "MARCHF1" "SOCS3" "JAK2" "HLA-DMA" "PARP12"
#> [79] "TNFAIP6" "TRIM26" "VCAM1" "CD274" "CIITA" "NAMPT"
#> [85] "SELP" "GPR18" "FPR1" "HELZ2" "PSME2" "SERPING1"
#> [91] "CCL5" "RNF31" "SOD2" "TRIM25" "LAP3" "PSMA3"
#> [97] "RNF213" "PELI1" "CFB" "CD86" "TXNIP" "HLA-DQA1"
#> [103] "GCH1" "PNP" "CCL7" "PTPN6" "SPPL2A" "IL4R"
#> [109] "PNPT1" "DHX58" "BTG1" "CASP8" "IFI30" "CCL2"
#> [115] "FGL2" "CASP7" "SECTM1" "IL15RA" "CD40" "TRAFD1"
#> [121] "HLA-DRB1" "GBP6" "LCP2" "HLA-G" "MT2A" "RIPK1"
#> [127] "KLRK1" "UPP1" "PSMB2" "TDRD7" "HIF1A" "EIF4E3"
#> [133] "VAMP8" "PFKP" "CD38" "ZBP1" "BANK1" "TOR1B"
#> [139] "RBCK1" "PDE4B" "MVP" "IL7" "BPGM" "CMTR1"
#> [145] "AUTS2" "B2M" "RIPK2" "CD69" "MYD88" "PSMA2"
#> [151] "PIM1" "NOD1" "CFH" "TAPBP" "SLC25A28" "PTPN1"
#> [157] "TNFAIP3" "SSPN" "NUP93" "MTHFD2" "CDKN1A" "IRF4"
#> [163] "NFKB1" "BATF2" "HLA-B" "LATS2" "IRF5" "SLAMF7"
#> [169] "ISOC1" "P2RY14" "STAT3" "NCOA3" "HLA-A" "IL6"
#> [175] "GZMA" "IFNAR2" "CD74" "RAPGEF6" "CASP4" "FAS"
#> [181] "OGFR" "ARL4A" "SRI" "LYSMD2" "CSF2RB" "ST3GAL5"
#> [187] "C1R" "CASP3" "CMKLR1" "NFKBIA" "METTL7B" "ST8SIA4"
#> [193] "XCL1" "IL2RB" "VAMP5" "IL18BP" "ZNFX1" "ARID5B"
#> [199] "APOL6" "STAT4"
#>
#> $HALLMARK_APICAL_JUNCTION
#> [1] "ACTN1" "CLDN7" "ACTN3" "CLDN19" "DLG1" "TJP1"
#> [7] "COL17A1" "NECTIN1" "CLDN9" "CDH3" "CTNND1" "CDH1"
#> [13] "LIMA1" "VCL" "SHROOM2" "NECTIN3" "NECTIN2" "CLDN14"
#> [19] "PTPRC" "THY1" "VASP" "ITGB1" "ZYX" "ACTN4"
#> [25] "CLDN4" "CADM3" "ITGA3" "NF2" "B4GALT1" "NEXN"
#> [31] "CDH6" "ADAM15" "PTK2" "HADH" "LAMB3" "CLDN11"
#> [37] "CDH4" "IRS1" "SORBS3" "CLDN8" "EVL" "CLDN15"
#> [43] "THBS3" "NECTIN4" "JAM3" "CDH11" "ITGB4" "RASA1"
#> [49] "AKT2" "TMEM8B" "LAMA3" "RSU1" "ICAM1" "CLDN18"
#> [55] "GTF2F1" "TSC1" "LAMC2" "NRAP" "CTNNA1" "CD99"
#> [61] "FSCN1" "COL16A1" "GNAI2" "TGFBI" "MPP5" "JUP"
#> [67] "ACTN2" "INSIG1" "LAYN" "PFN1" "CNN2" "TAOK2"
#> [73] "AMIGO2" "MDK" "INPPL1" "CLDN6" "ARPC2" "SRC"
#> [79] "PBX2" "MAPK14" "MAP4K2" "PTEN" "CALB2" "CNTN1"
#> [85] "TSPAN4" "VCAN" "CDH8" "ATP1A3" "EPB41L2" "MYL9"
#> [91] "SPEG" "ADRA1B" "SYK" "CADM2" "ALOX15B" "CX3CL1"
#> [97] "MYH10" "DMP1" "CDSN" "MAPK13" "MYL12B" "RAC2"
#> [103] "FBN1" "DSC1" "CD34" "ICAM4" "MSN" "MAPK11"
#> [109] "ACTC1" "TRAF1" "CRB3" "ITGA2" "ITGA10" "BAIAP2"
#> [115] "ARHGEF6" "ACTG1" "MVD" "PDZD3" "ADAM9" "PCDH1"
#> [121] "SLIT2" "KRT31" "SGCE" "GNAI1" "PIK3CB" "NLGN2"
#> [127] "YWHAH" "PARVA" "CRAT" "ADAMTS5" "AMH" "EGFR"
#> [133] "ICAM2" "CD274" "CDH15" "SHC1" "MPZL2" "WNK4"
#> [139] "NFASC" "PIK3R3" "SDC3" "SIRPA" "GRB7" "FLNC"
#> [145] "PARD6G" "COL9A1" "NRXN2" "MAP3K20" "SLC30A3" "RHOF"
#> [151] "BMP1" "MMP2" "ICAM5" "VWF" "MYH9" "CD209"
#> [157] "VCAM1" "DHX16" "ACTG2" "NEGR1" "NF1" "ADAM23"
#> [163] "PLCG1" "KCNH2" "CERCAM" "NRTN" "IKBKG" "DSC3"
#> [169] "ACTB" "TUBG1" "PPP2R2C" "HRAS" "MMP9" "TNFRSF11B"
#> [175] "PKD1" "CDK8" "FYB1" "AMIGO1" "CD276" "GAMT"
#> [181] "NLGN3" "SKAP2" "RRAS" "CAP1" "EXOC4" "ACTA1"
#> [187] "TIAL1" "LDLRAP1" "VAV2" "AKT3" "SYMPK" "STX4"
#> [193] "PECAM1" "MADCAM1" "ITGA9" "CD86" "TRO" "CLDN5"
#> [199] "MPZL1" "WASL"
#>
#> $HALLMARK_APICAL_SURFACE
#> [1] "B4GALT1" "RHCG" "MAL" "LYPD3" "PKHD1" "ATP6V0A4"
#> [7] "CRYBG1" "SHROOM2" "SRPX" "MDGA1" "TMEM8B" "THY1"
#> [13] "PCSK9" "EPHB4" "DCBLD2" "GHRL" "LYN" "GAS1"
#> [19] "FLOT2" "PLAUR" "AKAP7" "ATP8B1" "EFNA5" "SLC34A3"
#> [25] "APP" "GSTM3" "HSPB1" "SLC2A4" "IL2RB" "RTN4RL1"
#> [31] "NCOA6" "SULF2" "ADAM10" "BRCA1" "GATA3" "AFAP1L2"
#> [37] "IL2RG" "CD160" "ADIPOR2" "SLC22A12" "NTNG1" "SCUBE1"
#> [43] "CX3CL1" "CROCC"
#>
#> $HALLMARK_HEDGEHOG_SIGNALING
#> [1] "SHH" "PTCH1" "NRCAM" "NRP1" "SCG2" "AMOT" "UNC5C" "ADGRG1"
#> [9] "HEY1" "GLI1" "THY1" "SLIT1" "CDK6" "HEY2" "NRP2" "TLE3"
#> [17] "TLE1" "L1CAM" "PLG" "NKX6-1" "NF1" "RASA1" "ETS2" "RTN1"
#> [25] "CRMP1" "MYH9" "VEGFA" "CELSR1" "CNTFR" "ACHE" "PML" "CDK5R1"
#> [33] "VLDLR" "OPHN1" "LDB1" "DPYSL2"
#>
#> $HALLMARK_COMPLEMENT
#> [1] "C2" "C1S" "CFB" "C1R" "SERPINE1" "MMP14"
#> [7] "SERPING1" "CTSL" "F5" "MMP13" "F7" "CTSS"
#> [13] "LGMN" "PLG" "C1QA" "CASP1" "GZMA" "ADAM9"
#> [19] "CALM3" "C1QC" "TIMP1" "DPP4" "KLK1" "KLKB1"
#> [25] "CD59" "CR2" "MMP15" "LAP3" "SPOCK2" "F10"
#> [31] "CTSB" "SERPINA1" "CTSO" "CD40LG" "CBLB" "PDP1"
#> [37] "C4BPB" "PLEK" "GP9" "PLAUR" "C3" "F2"
#> [43] "CASP4" "STX4" "CTSC" "USP15" "CR1" "DUSP6"
#> [49] "SERPINB2" "GPD2" "CFH" "FN1" "CD36" "CA2"
#> [55] "PSMB9" "APOBEC3G" "FCN1" "GZMK" "PDGFB" "CLU"
#> [61] "CASP10" "LRP1" "CTSD" "S100A9" "WAS" "BRPF3"
#> [67] "PLAT" "CDA" "MT3" "CASP7" "PRSS36" "PFN1"
#> [73] "GZMB" "RNF4" "ZEB1" "CASP5" "IRF1" "CPQ"
#> [79] "CDK5R1" "ATOX1" "PIK3CA" "TMPRSS6" "CPM" "RCE1"
#> [85] "CALM1" "DOCK9" "KYNU" "RASGRP1" "USP14" "LCP2"
#> [91] "GP1BA" "KIF2A" "GNB4" "LCK" "OLR1" "PREP"
#> [97] "MSRB1" "LTA4H" "ZFPM2" "LYN" "ACTN2" "SIRT6"
#> [103] "APOC1" "PRKCD" "ITGAM" "DGKH" "LTF" "MAFF"
#> [109] "KCNIP2" "PCLO" "DOCK10" "SH2B3" "RABIF" "SRC"
#> [115] "HPCAL4" "CD46" "PRDM4" "GNAI3" "C9" "PPP2CB"
#> [121] "IRF2" "FYN" "JAK2" "PLA2G4A" "PRCP" "USP8"
#> [127] "RHOG" "L3MBTL4" "LAMP2" "PIM1" "CXCL1" "F3"
#> [133] "GNAI2" "CASP9" "XPNPEP1" "PLSCR1" "IRF7" "CD55"
#> [139] "HSPA5" "GNB2" "DYRK2" "PLA2G7" "S100A12" "GRB2"
#> [145] "PHEX" "GNGT2" "DOCK4" "MMP12" "KCNIP3" "FDX1"
#> [151] "TIMP2" "MMP8" "FCER1G" "RBSN" "ANXA5" "CTSV"
#> [157] "GCA" "EHD1" "PRSS3" "COL4A2" "CSRP1" "PIK3R5"
#> [163] "SERPINC1" "ANG" "APOBEC3F" "GATA3" "DUSP5" "CASP3"
#> [169] "USP16" "CP" "PSEN1" "LIPA" "PCSK9" "DGKG"
#> [175] "GNG2" "ME1" "GMFB" "SCG3" "PPP4C" "CCL5"
#> [181] "CTSH" "F8" "APOA4" "IL6" "AKAP10" "ERAP2"
#> [187] "VCPIP1" "HSPA1A" "RAF1" "NOTCH4" "ADRA2B" "CEBPB"
#> [193] "HNF4A" "LGALS3" "TNFAIP3" "CDH13" "ITIH1" "TFPI2"
#> [199] "PIK3CG" "S100A13"
#>
#> $HALLMARK_UNFOLDED_PROTEIN_RESPONSE
#> [1] "ATF4" "HERPUD1" "PARN" "EXOSC4" "HSP90B1" "XBP1"
#> [7] "EXOSC9" "HSPA5" "ATF3" "EXOSC1" "EXOSC5" "ASNS"
#> [13] "ARFGAP1" "WFS1" "SRPRB" "DNAJB9" "TSPYL2" "NFYA"
#> [19] "CALR" "KHSRP" "DNAJC3" "EXOSC2" "NOP14" "ATF6"
#> [25] "HYOU1" "RRP9" "NOP56" "CXXC1" "IGFBP1" "CNOT4"
#> [31] "DCP2" "PDIA6" "ATP6V0D1" "PREB" "SEC31A" "GOSR2"
#> [37] "SERP1" "NFYB" "NHP2" "DCTN1" "SLC7A5" "SSR1"
#> [43] "EDEM1" "EDC4" "EIF2AK3" "MTHFD2" "SRPRA" "NOLC1"
#> [49] "ERN1" "FKBP14" "ZBTB17" "WIPI1" "YIF1A" "CCL2"
#> [55] "DKC1" "EIF4EBP1" "EIF4A1" "EIF2S1" "TATDN2" "XPOT"
#> [61] "LSM4" "CHAC1" "STC2" "PDIA5" "NABP1" "LSM1"
#> [67] "SDAD1" "EIF4A2" "EIF4E" "IARS1" "DDX10" "GEMIN4"
#> [73] "TARS1" "ALDH18A1" "DDIT4" "HSPA9" "SEC11A" "EIF4A3"
#> [79] "POP4" "ERO1A" "CEBPG" "BAG3" "KDELR3" "CEBPB"
#> [85] "CNOT2" "SHC1" "SPCS3" "H2AX" "SLC1A4" "RPS14"
#> [91] "NPM1" "CNOT6" "CKS1B" "PSAT1" "EIF4G1" "YWHAZ"
#> [97] "SLC30A5" "MTREX" "KIF5B" "DCP1A" "IFIT1" "IMP3"
#> [103] "SPCS1" "DNAJA4" "VEGFA" "TTC37" "TUBB2A" "FUS"
#> [109] "EXOSC10" "EEF2" "EXOC2" "PAIP1" "BANF1"
#>
#> $HALLMARK_PI3K_AKT_MTOR_SIGNALING
#> [1] "MAPK8" "PIK3R3" "GRB2" "NFKBIB" "MAP2K6" "MAPK9"
#> [7] "AKT1" "MAPK1" "PLCG1" "TRIB3" "GSK3B" "MAP2K3"
#> [13] "CDKN1A" "RAC1" "RIPK1" "AKT1S1" "ACTR2" "PRKAR2A"
#> [19] "YWHAB" "HRAS" "PDK1" "PIKFYVE" "TBK1" "ACTR3"
#> [25] "E2F1" "MYD88" "ITPR2" "SQSTM1" "RPS6KA1" "PTPN11"
#> [31] "MAPKAP1" "PLCB1" "RAF1" "CAMK4" "RPTOR" "CFL1"
#> [37] "CDK4" "TRAF2" "GNGT1" "UBE2N" "ADCY2" "CDKN1B"
#> [43] "VAV3" "FGF6" "ECSIT" "RALB" "ARF1" "MKNK1"
#> [49] "CDK1" "PTEN" "ARHGDIA" "GRK2" "FGF17" "DDIT3"
#> [55] "IRAK4" "TIAM1" "CDK2" "SFN" "PRKCB" "GNA14"
#> [61] "EIF4E" "CLTC" "TSC2" "FGF22" "PPP1CA" "DUSP3"
#> [67] "HSP90B1" "IL4" "STAT2" "SLA" "EGFR" "PLA2G12A"
#> [73] "MAPK10" "CALR" "THEM4" "RIT1" "MKNK2" "PPP2R1B"
#> [79] "CAB39L" "ARPC3" "PITX2" "NCK1" "IL2RG" "PFN1"
#> [85] "FASLG" "NOD1" "DAPP1" "UBE2D3" "CAB39" "AP2M1"
#> [91] "MAP3K7" "PRKAG1" "CSNK2B" "PRKAA2" "ATF1" "SLC2A1"
#> [97] "PIN1" "TNFRSF1A" "LCK" "RPS6KA3" "NGF" "CXCR4"
#> [103] "ACACA" "SMAD2" "PAK4"
#>
#> $HALLMARK_MTORC1_SIGNALING
#> [1] "FADS1" "DDIT4" "CALR" "HK2" "PGK1" "SLC7A5"
#> [7] "CTSC" "ACSL3" "SLC1A5" "M6PR" "TFRC" "DDIT3"
#> [13] "TMEM97" "IFRD1" "PLOD2" "TUBA4A" "PSAT1" "CORO1A"
#> [19] "LDHA" "MTHFD2" "FADS2" "VLDLR" "WARS1" "SCD"
#> [25] "P4HA1" "ACTR2" "IDH1" "SLC2A1" "GBE1" "SERPINH1"
#> [31] "NUPR1" "PSMG1" "PSPH" "NAMPT" "CDKN1A" "BHLHE40"
#> [37] "HSPA9" "HSPA5" "EGLN3" "LGMN" "PNP" "XBP1"
#> [43] "SLA" "DDX39A" "HSPE1" "ACLY" "SLC7A11" "SSR1"
#> [49] "GLA" "SQSTM1" "PDK1" "PSMC2" "PRDX1" "SERP1"
#> [55] "TRIB3" "NFIL3" "HMGCS1" "GOT1" "TPI1" "ELOVL6"
#> [61] "ASNS" "PSMD14" "PSMA4" "PPA1" "HPRT1" "AURKA"
#> [67] "HMGCR" "GAPDH" "DHFR" "DHCR7" "IMMT" "UCHL5"
#> [73] "YKT6" "INSIG1" "SQLE" "IGFBP5" "IFI30" "CYP51A1"
#> [79] "FGL2" "ENO1" "IDI1" "CYB5B" "SHMT2" "TXNRD1"
#> [85] "G6PD" "SLC9A3R1" "RAB1A" "EBP" "PNO1" "PIK3R3"
#> [91] "ACTR3" "LDLR" "SLC2A3" "UBE2D3" "ELOVL5" "CACYBP"
#> [97] "EDEM1" "ATP6V1D" "TES" "TM7SF2" "PSMA3" "ITGB2"
#> [103] "AK4" "SLC1A4" "TOMM40" "SLC6A6" "PPIA" "ADD3"
#> [109] "ME1" "CCNF" "SLC37A4" "ALDOA" "BTG2" "UFM1"
#> [115] "CCNG1" "STC1" "NMT1" "PSMC6" "FDXR" "RRM2"
#> [121] "DHCR24" "PSMC4" "CTH" "PSME3" "CFP" "POLR3G"
#> [127] "ACACA" "QDPR" "MCM2" "PSMD12" "SC5D" "CANX"
#> [133] "RPN1" "HSPA4" "NIBAN1" "TBK1" "SEC11A" "BCAT1"
#> [139] "PSMB5" "PSMD13" "PGM1" "PLK1" "GLRX" "COPS5"
#> [145] "ETF1" "GSK3B" "NUP205" "SORD" "PHGDH" "GMPS"
#> [151] "RRP9" "EEF1E1" "LTA4H" "SDF2L1" "FKBP2" "RDH11"
#> [157] "CXCR4" "MLLT11" "GCLC" "TCEA1" "MAP2K3" "HSPD1"
#> [163] "SYTL2" "MCM4" "PPP1R15A" "USO1" "NFKBIB" "UNG"
#> [169] "GTF2H1" "RPA1" "HSP90B1" "ERO1A" "GSR" "PITPNB"
#> [175] "EPRS1" "SRD5A1" "TUBG1" "MTHFD2L" "ADIPOR2" "NUFIP1"
#> [181] "CDC25A" "PDAP1" "STARD4" "BUB1" "ARPC5L" "GPI"
#> [187] "EIF2S2" "CD9" "ATP2A2" "GGA2" "HMBS" "RIT1"
#> [193] "SKAP2" "STIP1" "DAPP1" "ABCF2" "NFYC" "ATP5MC1"
#> [199] "PFKL" "CCT6A"
#>
#> $HALLMARK_E2F_TARGETS
#> [1] "AURKA" "BRCA2" "CCP110" "CENPE" "CKS2" "DCLRE1B"
#> [7] "DNMT1" "DONSON" "EED" "GINS1" "GINS4" "H2AZ1"
#> [13] "LIG1" "MAD2L1" "MCM2" "MCM4" "MCM5" "MCM7"
#> [19] "MELK" "MMS22L" "NAA38" "NASP" "NUDT21" "NUP205"
#> [25] "ORC6" "PCNA" "PLK4" "POLE" "PRIM2" "RAD51AP1"
#> [31] "RFC2" "RPA2" "RPA3" "SUV39H1" "TMPO" "UBE2T"
#> [37] "WDR90" "CDK1" "MCM3" "TOP2A" "MCM6" "BIRC5"
#> [43] "CCNB2" "RRM2" "HMGB2" "BUB1B" "RFC3" "EZH2"
#> [49] "CHEK1" "SMC4" "MKI67" "CDC20" "PLK1" "KIF2C"
#> [55] "DLGAP5" "AURKB" "CDC25A" "TRIP13" "H2AX" "HMMR"
#> [61] "E2F8" "BRCA1" "MYBL2" "POLD1" "RACGAP1" "CKS1B"
#> [67] "KPNA2" "MSH2" "CDKN3" "ATAD2" "RPA1" "STMN1"
#> [73] "TIPIN" "TK1" "CDCA8" "ESPL1" "NCAPD2" "RANBP1"
#> [79] "MRE11" "KIF4A" "LMNB1" "KIF22" "UNG" "SMC1A"
#> [85] "CCNE1" "CDCA3" "ASF1B" "POLA2" "TIMELESS" "HELLS"
#> [91] "UBE2S" "PRKDC" "RAN" "USP1" "SPAG5" "POLD3"
#> [97] "DUT" "TACC3" "KIF18B" "CDC25B" "SRSF1" "GINS3"
#> [103] "NOLC1" "SLBP" "CHEK2" "SPC25" "BARD1" "DCTPP1"
#> [109] "SMC3" "RNASEH2A" "DEK" "CENPM" "RAD51C" "CBX5"
#> [115] "RFC1" "POLD2" "DSCC1" "ILF3" "DEPDC1" "DCK"
#> [121] "CDKN2C" "MYC" "TCF19" "RAD1" "LBR" "NBN"
#> [127] "PTTG1" "UBR7" "POLE4" "TUBG1" "CTCF" "CNOT9"
#> [133] "TUBB" "SMC6" "ZW10" "PA2G4" "SSRP1" "NAP1L1"
#> [139] "ANP32E" "HMGB3" "IPO7" "RAD21" "CDK4" "CDKN1A"
#> [145] "BRMS1L" "CTPS1" "RAD50" "TRA2B" "CSE1L" "PAICS"
#> [151] "STAG1" "LUC7L3" "PPM1D" "NME1" "SRSF2" "XPO1"
#> [157] "HNRNPD" "PMS2" "ASF1A" "EXOSC8" "MLH1" "NUP107"
#> [163] "ORC2" "TP53" "TFRC" "HMGA1" "PSIP1" "DDX39A"
#> [169] "SNRPB" "CDKN1B" "MTHFD2" "WEE1" "PRDX4" "PHF5A"
#> [175] "TBRG4" "SHMT1" "PRPS1" "DIAPH3" "NUP153" "PSMC3IP"
#> [181] "XRCC6" "PNN" "HUS1" "RBBP7" "PDS5B" "NOP56"
#> [187] "MXD3" "PPP1R8" "GSPT1" "CDKN2A" "AK2" "CIT"
#> [193] "ING3" "JPT1" "POP7" "SYNCRIP" "EIF2S1" "LYAR"
#> [199] "PAN2" "SPC24"
#>
#> $HALLMARK_MYC_TARGETS_V1
#> [1] "PCNA" "PSMD8" "PSMD7" "SET" "SNRPA1" "RAN"
#> [7] "SRSF2" "G3BP1" "STARD7" "NPM1" "BUB3" "EIF3D"
#> [13] "XPO1" "FBL" "EIF4A1" "CANX" "NAP1L1" "CBX3"
#> [19] "CCT3" "C1QBP" "U2AF1" "UBE2L3" "SSBP1" "SRSF1"
#> [25] "TCP1" "MCM2" "EIF3B" "PSMD14" "SNRPA" "PWP1"
#> [31] "APEX1" "TXNL4A" "HNRNPR" "PSMB2" "HPRT1" "MCM6"
#> [37] "NME1" "SNRPD1" "EEF1B2" "HSPD1" "CAD" "RPL18"
#> [43] "PGK1" "DDX18" "RPS2" "LDHA" "RUVBL2" "RNPS1"
#> [49] "EIF2S1" "RANBP1" "MCM5" "IARS1" "UBE2E1" "MYC"
#> [55] "AP3S1" "RFC4" "DUT" "PSMA4" "RPS3" "SNRPG"
#> [61] "PHB2" "SSB" "EIF4H" "SRSF3" "CCT4" "TFDP1"
#> [67] "EIF2S2" "CDK4" "SNRPD3" "PSMD1" "RACK1" "GOT2"
#> [73] "PABPC4" "CCT5" "PRPS2" "ACP1" "PRPF31" "CCT2"
#> [79] "KARS1" "DEK" "EIF4G2" "XPOT" "SRM" "UBA2"
#> [85] "KPNB1" "PSMA7" "TRA2B" "COX5A" "PA2G4" "PCBP1"
#> [91] "HNRNPA1" "CCNA2" "PPIA" "EIF3J" "ORC2" "PSMA2"
#> [97] "SYNCRIP" "HDAC2" "LSM2" "VBP1" "PSMA6" "CNBP"
#> [103] "CDK2" "TARDBP" "NOLC1" "GSPT1" "HNRNPA2B1" "ETF1"
#> [109] "RPL6" "TOMM70" "PTGES3" "PSMA1" "PSMC6" "CTPS1"
#> [115] "HSPE1" "FAM120A" "PPM1G" "HNRNPD" "SERBP1" "CSTF2"
#> [121] "PRDX4" "EIF4E" "ODC1" "USP1" "RPL22" "HNRNPA3"
#> [127] "NCBP1" "RPLP0" "ABCE1" "EIF1AX" "YWHAE" "MCM7"
#> [133] "YWHAQ" "VDAC1" "SMARCC1" "SNRPD2" "HNRNPU" "HDDC2"
#> [139] "PSMD3" "RRM1" "SF3A1" "LSM7" "ERH" "RPL14"
#> [145] "PSMB3" "IFRD1" "NCBP2" "GLO1" "NDUFAB1" "CUL1"
#> [151] "NHP2" "CLNS1A" "TRIM28" "RSL1D1" "HNRNPC" "COPS5"
#> [157] "XRCC6" "SLC25A3" "MRPL9" "POLE3" "POLD2" "H2AZ1"
#> [163] "AIMP2" "NOP56" "PRDX3" "MRPS18B" "EPRS1" "KPNA2"
#> [169] "HSP90AB1" "RPL34" "SRPK1" "MAD2L1" "DHX15" "MCM4"
#> [175] "RPS5" "CCT7" "HDGF" "RPS6" "SNRPB2" "PSMC4"
#> [181] "CDC20" "TUFM" "RRP9" "CDC45" "TYMS" "ILF2"
#> [187] "VDAC3" "IMPDH2" "SF3B3" "NOP16" "SRSF7" "GNL3"
#> [193] "EXOSC7" "MRPL23" "RAD23B" "RPS10" "PHB" "DDX21"
#> [199] "CYC1" "PABPC1"
#>
#> $HALLMARK_MYC_TARGETS_V2
#> [1] "SLC19A1" "MRTO4" "TMEM97" "RRP9" "PES1" "TFB2M"
#> [7] "EXOSC5" "IPO4" "NDUFAF4" "NOC4L" "MYC" "SRM"
#> [13] "PA2G4" "GNL3" "NOLC1" "WDR43" "RABEPK" "NOP16"
#> [19] "TBRG4" "DDX18" "NIP7" "WDR74" "BYSL" "HSPD1"
#> [25] "PLK4" "NOP2" "PPAN" "NOP56" "RCL1" "NPM1"
#> [31] "AIMP2" "RRP12" "PPRC1" "TCOF1" "MCM5" "HK2"
#> [37] "CBX3" "PLK1" "PHB" "MCM4" "CDK4" "DUSP2"
#> [43] "MYBBP1A" "UTP20" "PRMT3" "FARSA" "MAP3K6" "LAS1L"
#> [49] "PUS1" "HSPE1" "SLC29A2" "DCTPP1" "SUPV3L1" "SORD"
#> [55] "IMP4" "GRWD1" "UNG" "MPHOSPH10"
#>
#> $HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
#> [1] "COL3A1" "COL5A2" "COL5A1" "FBN1" "COL1A1" "FN1"
#> [7] "COL6A3" "SERPINE1" "COL1A2" "COL4A1" "COL4A2" "VCAN"
#> [13] "IGFBP3" "TGFBI" "SPARC" "LUM" "LAMC1" "LOX"
#> [19] "LAMC2" "CCN2" "TAGLN" "COL7A1" "LOXL2" "COL6A2"
#> [25] "ITGAV" "THBS2" "COL16A1" "NNMT" "TPM1" "CDH2"
#> [31] "MMP2" "COL11A1" "THBS1" "FAP" "BGN" "SERPINH1"
#> [37] "FSTL1" "POSTN" "THY1" "SPP1" "TNC" "TFPI2"
#> [43] "NID2" "ITGB5" "MMP3" "VIM" "LOXL1" "FBLN5"
#> [49] "COL12A1" "ELN" "CDH11" "COMP" "SPOCK1" "BMP1"
#> [55] "IL32" "LAMA3" "TIMP1" "QSOX1" "TIMP3" "VCAM1"
#> [61] "CCN1" "EDIL3" "CALD1" "MAGEE1" "FBLN1" "SGCB"
#> [67] "ECM1" "LAMA2" "FSTL3" "TPM2" "INHBA" "DAB2"
#> [73] "EMP3" "BASP1" "ITGA5" "MGP" "VEGFA" "CXCL1"
#> [79] "WNT5A" "SDC1" "PLOD2" "PCOLCE" "GREM1" "ITGB1"
#> [85] "COL5A3" "RHOB" "HTRA1" "FGF2" "SNTB1" "GADD45A"
#> [91] "MEST" "LRRC15" "TNFRSF11B" "CD59" "ACTA2" "EFEMP2"
#> [97] "MATN2" "PCOLCE2" "SERPINE2" "GPC1" "ABI3BP" "FUCA1"
#> [103] "SLIT3" "LAMA1" "PMEPA1" "COL8A2" "FBN2" "IGFBP2"
#> [109] "PFN2" "SDC4" "CD44" "GADD45B" "CXCL8" "GLIPR1"
#> [115] "ANPEP" "P3H1" "VEGFC" "MMP14" "SGCD" "PLOD1"
#> [121] "MATN3" "MYL9" "SLC6A8" "CALU" "PRRX1" "TNFRSF12A"
#> [127] "FMOD" "ID2" "GEM" "PLAUR" "MYLK" "TGFB1"
#> [133] "SFRP1" "PLOD3" "IL6" "APLP1" "FBLN2" "MSX1"
#> [139] "PTX3" "FZD8" "JUN" "FERMT2" "DKK1" "SNAI2"
#> [145] "DST" "TPM4" "DCN" "GJA1" "PMP22" "IGFBP4"
#> [151] "COPA" "LRP1" "ITGA2" "FLNA" "MFAP5" "PTHLH"
#> [157] "TGFBR3" "SFRP4" "LGALS1" "RGS4" "CDH6" "SAT1"
#> [163] "NT5E" "DPYSL3" "PPIB" "TGM2" "SGCG" "ITGB3"
#> [169] "PDLIM4" "CTHRC1" "ECM2" "CRLF1" "AREG" "IL15"
#> [175] "MCM7" "GAS1" "PRSS2" "CADM1" "OXTR" "SCG2"
#> [181] "CXCL6" "MMP1" "TNFAIP3" "CAPG" "CAP2" "MXRA5"
#> [187] "FOXC2" "NTM" "ENO2" "FAS" "BDNF" "ADAM12"
#> [193] "PVR" "CXCL12" "PDGFRB" "SLIT2" "NOTCH2" "COLGALT1"
#> [199] "GPX7" "WIPF1"
#>
#> $HALLMARK_INFLAMMATORY_RESPONSE
#> [1] "CXCL10" "CCL2" "CCL5" "FPR1" "CCL20" "IL1A"
#> [7] "CXCL8" "CCL7" "CCL22" "CXCL11" "CCR7" "EDN1"
#> [13] "CD40" "CXCL9" "IL6" "IL1B" "TLR2" "IL1R1"
#> [19] "CD69" "ICAM1" "CCRL2" "AQP9" "EREG" "C3AR1"
#> [25] "GNA15" "CMKLR1" "PTGER4" "LIF" "IL15" "NAMPT"
#> [31] "OPRK1" "ITGB8" "PTAFR" "ADM" "PLAUR" "NFKB1"
#> [37] "INHBA" "OSM" "TNFSF10" "TNFSF15" "IFNGR2" "ADGRE1"
#> [43] "IL12B" "CSF1" "CXCL6" "TNFRSF9" "LYN" "ACVR2A"
#> [49] "LDLR" "BDKRB1" "HRH1" "F3" "BST2" "PTGIR"
#> [55] "CD55" "CALCRL" "CSF3" "GPR132" "IL4R" "NLRP3"
#> [61] "IL15RA" "ADORA2B" "GCH1" "OLR1" "PTGER2" "CSF3R"
#> [67] "MYC" "RELA" "TNFAIP6" "IL7R" "IL18" "GABBR1"
#> [73] "CD82" "TNFSF9" "NMUR1" "IL2RB" "TLR1" "LPAR1"
#> [79] "IRAK2" "RIPK2" "MMP14" "P2RX7" "SLC11A2" "SELL"
#> [85] "P2RY2" "ABCA1" "FFAR2" "PROK2" "GNAI3" "TACR1"
#> [91] "SLC7A1" "CDKN1A" "CYBB" "TIMP1" "HBEGF" "SCARF1"
#> [97] "EBI3" "NFKBIA" "SRI" "SLC7A2" "CCL17" "TLR3"
#> [103] "APLNR" "OSMR" "IL10RA" "PSEN1" "GPR183" "ATP2B1"
#> [109] "TNFRSF1B" "BEST1" "GPC3" "SCN1B" "ACVR1B" "HPN"
#> [115] "SEMA4D" "KLF6" "CD48" "CXCR6" "SLC1A2" "GP1BA"
#> [121] "TAPBP" "RGS16" "SLAMF1" "LCK" "HIF1A" "AHR"
#> [127] "NMI" "RHOG" "TPBG" "NPFFR2" "IFNAR1" "ICOSLG"
#> [133] "RASGRP1" "IFITM1" "KCNJ2" "LY6E" "IL18R1" "IL10"
#> [139] "KCNA3" "HAS2" "DCBLD2" "LAMP3" "VIP" "CD70"
#> [145] "RGS1" "SLC31A1" "ADRM1" "KCNMB2" "SERPINE1" "MXD1"
#> [151] "AXL" "MEFV" "PVR" "CCL24" "PDE4B" "LCP2"
#> [157] "PDPN" "IRF7" "MET" "ATP2A2" "SLC31A2" "FZD5"
#> [163] "ITGA5" "SGMS2" "MARCO" "CD14" "EIF2AK2" "ROS1"
#> [169] "ATP2C1" "NDP" "BTG2" "MSR1" "PTPRE" "RNF144B"
#> [175] "PCDH7" "SPHK1" "IL18RAP" "RTP4" "RAF1" "CHST2"
#> [181] "ITGB3" "KIF1B" "SELE" "NOD2" "C5AR1" "EMP3"
#> [187] "CLEC5A" "TACR3" "SLC4A4" "MEP1A" "SELENOS" "LTA"
#> [193] "PIK3R5" "STAB1" "IRF1" "ICAM4" "P2RX4" "ABI1"
#> [199] "CX3CL1" "SLC28A2"
#>
#> $HALLMARK_XENOBIOTIC_METABOLISM
#> [1] "CYP1A1" "FAH" "DCXR" "CYP1A2" "GSTA3" "CYP2J2"
#> [7] "CYP27A1" "ADH1C" "UGDH" "ASL" "NQO1" "ALAS1"
#> [13] "GSTM4" "CYP2C18" "PTS" "CYB5A" "ACOX2" "EPHX1"
#> [19] "LCAT" "SLC35D1" "GSS" "FMO3" "IDH1" "AKR1C3"
#> [25] "SLC22A1" "GSTO1" "ARG1" "CDO1" "FMO1" "ALDH9A1"
#> [31] "POR" "NDRG2" "UPB1" "ECH1" "PTGES" "PDK4"
#> [37] "AHCY" "COMT" "AOX1" "CFB" "DDAH2" "HGFAC"
#> [43] "F11" "CYP26A1" "MCCC2" "SERPINA6" "GNMT" "BLVRB"
#> [49] "HACL1" "MAOA" "KYNU" "DHPS" "SERPINE1" "SLC6A12"
#> [55] "GCH1" "DHRS7" "PAPSS2" "ALDH2" "HSD11B1" "SLC35B1"
#> [61] "KARS1" "CA2" "LPIN2" "CAT" "CYP2S1" "RAP1GAP"
#> [67] "FBP1" "RBP4" "GCKR" "CDA" "MTHFD1" "ADH7"
#> [73] "DHRS1" "VNN1" "CNDP2" "SLC6A6" "FETUB" "CROT"
#> [79] "GAD1" "AKR1C2" "TKFC" "IGF1" "SSR3" "GABARAPL1"
#> [85] "TMBIM6" "CD36" "CES1" "SHMT2" "TMEM176B" "GSTT2"
#> [91] "PLG" "HMOX1" "SPINT2" "ALDH3A1" "GSR" "ABHD6"
#> [97] "XDH" "PPARD" "ELOVL5" "CYP4F2" "RETSAT" "CYFIP2"
#> [103] "PINK1" "GCLC" "ESR1" "PMM1" "TDO2" "MT2A"
#> [109] "ATP2A2" "DDT" "FABP1" "ACP2" "ABCD2" "G6PC"
#> [115] "DDC" "ACOX3" "SAR1B" "FBLN1" "ADH5" "CRP"
#> [121] "ABCC2" "ETS2" "NPC1" "CASP6" "BPHL" "IL1R1"
#> [127] "ENTPD5" "TNFRSF1A" "IGFBP4" "PYCR1" "CSAD" "VTN"
#> [133] "ID2" "ETFDH" "HRG" "TYR" "UPP1" "BCAR1"
#> [139] "CBR1" "APOE" "SLC12A4" "TMEM97" "SLC46A3" "PTGDS"
#> [145] "MPP2" "PTGR1" "AQP9" "EPHA2" "PSMB10" "FAS"
#> [151] "ACOX1" "GART" "HPRT1" "PGD" "ABCC3" "SMOX"
#> [157] "TTPA" "HES6" "GCNT2" "MAN1A1" "IGFBP1" "ITIH4"
#> [163] "PROS1" "TPST1" "LEAP2" "NFS1" "PGRMC1" "CYP17A1"
#> [169] "ARPP19" "SERTAD1" "ARG2" "HNF4A" "REG1A" "CCL25"
#> [175] "PEMT" "ACO2" "LONP1" "NMT1" "PTGES3" "F10"
#> [181] "TAT" "MARCHF6" "JUP" "ACP1" "MBL2" "TGFB2"
#> [187] "ENPEP" "HSD17B2" "ANGPTL3" "PC" "PDLIM5" "CYP2E1"
#> [193] "BCAT1" "ATOH8" "SLC1A5" "IRF8" "NINJ1" "AP4B1"
#> [199] "ACSM1" "ITIH1"
#>
#> $HALLMARK_FATTY_ACID_METABOLISM
#> [1] "ACAA1" "ACAA2" "ACADL" "ACADM" "ACOT8" "ACOX1"
#> [7] "ACSL1" "ALDH3A2" "CCDC58" "CPT2" "CYP4A11" "DECR1"
#> [13] "ECH1" "ECI1" "ELOVL5" "FABP1" "FABP2" "HADH"
#> [19] "HIBCH" "HMGCL" "HSD17B11" "IDH1" "ME1" "MGLL"
#> [25] "MLYCD" "PCBD1" "RETSAT" "S100A10" "SUCLG1" "VNN1"
#> [31] "EHHADH" "ALDH9A1" "HADHB" "ECHS1" "ACADS" "CA2"
#> [37] "HSD17B10" "ALDH1A1" "ACADVL" "HSD17B4" "CA4" "ADH1C"
#> [43] "ADH7" "PTS" "MAOA" "HAO2" "HSD17B7" "MCEE"
#> [49] "ACAT2" "AUH" "HPGD" "FH" "HMGCS2" "ALAD"
#> [55] "GPD1" "ACO2" "CBR1" "GRHPR" "ACOT2" "G0S2"
#> [61] "MDH2" "HSP90AA1" "BCKDHB" "UROS" "YWHAH" "LDHA"
#> [67] "CRYZ" "RDH16" "INMT" "UGDH" "GSTZ1" "IDH3B"
#> [73] "MDH1" "CRAT" "ETFDH" "CD36" "ECI2" "SDHD"
#> [79] "ACSL5" "HSDL2" "HMGCS1" "SDHC" "CD1D" "GCDH"
#> [85] "GPD2" "ALDH3A1" "SLC22A5" "PDHB" "TDO2" "FASN"
#> [91] "NBN" "PSME1" "PPARA" "NCAPH2" "BPHL" "ODC1"
#> [97] "CA6" "DLD" "HCCS" "EPHX1" "DLST" "FMO1"
#> [103] "AOC3" "UROD" "CPT1A" "KMT5A" "UBE2L6" "MIF"
#> [109] "SUCLG2" "CPOX" "SMS" "CBR3" "NTHL1" "CIDEA"
#> [115] "IDI1" "AADAT" "REEP6" "HSPH1" "APEX1" "NSDHL"
#> [121] "ADIPOR2" "ACSL4" "ACSS1" "ENO3" "IDH3G" "LGALS1"
#> [127] "METAP1" "ALDOA" "ACSM3" "LTC4S" "D2HGDH" "ADSL"
#> [133] "SUCLA2" "SDHA" "XIST" "OSTC" "GLUL" "CYP4A22"
#> [139] "GABARAPL1" "AQP7" "CYP1A1" "PRDX6" "ERP29" "H2AZ1"
#> [145] "GAPDHS" "DHCR24" "GAD2" "PTPRG" "IL4I1" "TP53INP2"
#> [151] "PDHA1" "RAP1GDS1" "CEL" "BLVRA" "SERINC1" "BMPR1B"
#> [157] "RDH11" "ENO2"
#>
#> $HALLMARK_OXIDATIVE_PHOSPHORYLATION
#> [1] "NDUFS3" "UQCRB" "NDUFS2" "SDHA" "UQCRC1" "NDUFA9"
#> [7] "NDUFS4" "NDUFS1" "NDUFA2" "NDUFS8" "SDHB" "NNT"
#> [13] "ATP5PO" "ATP5MC3" "NDUFS7" "ATP5F1A" "NDUFV1" "COX5B"
#> [19] "UQCRH" "NDUFA1" "ATP5F1C" "ATP5F1B" "COX7B" "SDHD"
#> [25] "CYCS" "NDUFA6" "NDUFAB1" "COX8A" "ACO2" "ATP5MC1"
#> [31] "CYC1" "NDUFB6" "ATP5F1E" "COX5A" "UQCRC2" "COX6A1"
#> [37] "ATP5F1D" "COX6C" "ATP5PF" "NDUFB3" "IDH3B" "OGDH"
#> [43] "NDUFB8" "SURF1" "COX6B1" "NDUFB5" "NDUFA4" "NDUFB1"
#> [49] "COX4I1" "COX7C" "UQCRFS1" "SDHC" "ATP6V1F" "COX7A2"
#> [55] "SUCLG1" "NDUFS6" "NDUFA7" "FH" "NDUFV2" "OXA1L"
#> [61] "NDUFC1" "UQCR11" "NDUFA5" "CS" "ATP6V1G1" "ATP5PB"
#> [67] "HCCS" "HADHB" "ATP5PD" "PDHA1" "NDUFA8" "DLD"
#> [73] "OPA1" "SLC25A11" "ATP5ME" "PDHB" "ATP5MF" "NDUFB7"
#> [79] "IDH2" "MTX2" "VDAC3" "MDH1" "ATP5MC2" "IMMT"
#> [85] "MDH2" "SLC25A3" "ATP6V1D" "VDAC2" "ACADM" "COX7A2L"
#> [91] "TIMM17A" "ATP6V1E1" "NDUFA3" "SLC25A6" "IDH3G" "ACADVL"
#> [97] "ETFA" "TIMM9" "IDH3A" "TIMM8B" "ATP6AP1" "TIMM13"
#> [103] "UQCRQ" "ABCB7" "VDAC1" "ATP5MG" "PHB2" "DECR1"
#> [109] "SUCLA2" "GOT2" "DLAT" "ATP6V1H" "NDUFB2" "FDX1"
#> [115] "HADHA" "ATP6V1C1" "MAOB" "NDUFB4" "UQCR10" "ETFDH"
#> [121] "GPX4" "PDHX" "MFN2" "AIFM1" "ACAA2" "ETFB"
#> [127] "COX11" "ECHS1" "PMPCA" "ATP6V0B" "SLC25A5" "DLST"
#> [133] "COX15" "CYB5A" "ALAS1" "SLC25A4" "CPT1A" "SLC25A20"
#> [139] "MTRR" "COX17" "CYB5R3" "TOMM22" "ACAT1" "MRPS11"
#> [145] "ATP6V0C" "PDK4" "TIMM10" "LDHA" "ECI1" "MRPL11"
#> [151] "FXN" "MRPS12" "COX10" "RHOT1" "ACAA1" "ACADSB"
#> [157] "LDHB" "MRPS30" "ATP1B1" "BDH2" "SLC25A12" "TIMM50"
#> [163] "MRPL34" "ISCA1" "MRPL35" "IDH1" "HSPA9" "MRPL15"
#> [169] "MRPS15" "TOMM70" "TCIRG1" "ISCU" "POLR2F" "NQO2"
#> [175] "NDUFC2" "MRPS22" "POR" "ATP6V0E1" "PHYH" "MPC1"
#> [181] "GPI" "AFG3L2" "HSD17B10" "CASP7" "PRDX3" "MGST3"
#> [187] "HTRA2" "BCKDHA" "LRPPRC" "RETSAT" "ECH1" "RHOT2"
#> [193] "BAX" "MTRF1" "GLUD1" "SUPV3L1" "GRPEL1" "PDP1"
#> [199] "ALDH6A1" "OAT"
#>
#> $HALLMARK_GLYCOLYSIS
#> [1] "PGK1" "ALDOA" "ENO1" "TPI1" "PFKP" "ERO1A"
#> [7] "ALDOB" "VEGFA" "MXI1" "PKM" "HK2" "LDHA"
#> [13] "EXT1" "SLC25A10" "GUSB" "PFKFB1" "PGAM1" "PYGB"
#> [19] "AK4" "P4HA1" "PMM2" "FAM162A" "SDC1" "EGLN3"
#> [25] "PC" "B4GALT7" "FBP2" "IGFBP3" "CHPF" "B3GAT3"
#> [31] "CHST12" "HS2ST1" "MPI" "GNPDA1" "AKR1A1" "PPFIA4"
#> [37] "B3GAT1" "CHPF2" "G6PD" "MDH2" "CHST6" "PGLS"
#> [43] "PGAM2" "CHST1" "GPC1" "GFUS" "ALG1" "GFPT1"
#> [49] "PRPS1" "GOT1" "MDH1" "SLC35A3" "GALK1" "EGFR"
#> [55] "ANGPTL4" "CITED2" "PLOD2" "QSOX1" "ME2" "SPAG4"
#> [61] "P4HA2" "GAPDHS" "ENO2" "GOT2" "EXT2" "SLC25A13"
#> [67] "HMMR" "PDK3" "CXCR4" "GPC4" "ECD" "GNE"
#> [73] "B4GALT2" "FUT8" "MIOX" "VCAN" "GPC3" "B3GALT6"
#> [79] "HSPA5" "ME1" "ADORA2B" "UGP2" "MIF" "NANP"
#> [85] "ZNF292" "STC2" "TPST1" "PGM2" "GYS1" "TKTL1"
#> [91] "TGFA" "CHST2" "PHKA2" "STMN1" "GALE" "MET"
#> [97] "LCT" "IRS2" "POLR3K" "B4GALT1" "EFNA3" "LHX9"
#> [103] "KDELR3" "TALDO1" "DPYSL4" "VLDLR" "CD44" "AGL"
#> [109] "SOX9" "DDIT4" "IDUA" "CASP6" "GLCE" "COPB2"
#> [115] "DSC2" "HS6ST2" "CDK1" "PLOD1" "SDC2" "GMPPB"
#> [121] "PAXIP1" "NSDHL" "RARS1" "SLC16A3" "GLRX" "SRD5A3"
#> [127] "SDC3" "HDLBP" "COL5A1" "CLDN9" "TFF3" "STC1"
#> [133] "KIF20A" "GYS2" "SLC37A4" "LHPP" "SDHC" "NASP"
#> [139] "AURKA" "B3GNT3" "ISG20" "LDHC" "ARPP19" "CENPA"
#> [145] "HOMER1" "BIK" "CYB5A" "HAX1" "COG2" "IL13RA1"
#> [151] "NOL3" "CLDN3" "AGRN" "CLN6" "TXN" "PAM"
#> [157] "CAPN5" "PKP2" "ABCB6" "DCN" "GMPPA" "BPNT1"
#> [163] "ANG" "GPR87" "GAL3ST1" "ALDH7A1" "NT5E" "IDH1"
#> [169] "PYGL" "NDUFV3" "NDST3" "PPP2CB" "PSMC4" "TPBG"
#> [175] "TGFBI" "GALK2" "CTH" "KIF2A" "CACNA1H" "ANKZF1"
#> [181] "SAP30" "RBCK1" "ELF3" "RPE" "B4GALT4" "DEPDC1"
#> [187] "RRAGD" "IER3" "ALDH9A1" "DLD" "MERTK" "GCLC"
#> [193] "FKBP4" "SOD1" "MED24" "AK3" "XYLT2" "ARTN"
#> [199] "PPIA" "CHST4"
#>
#> $HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY
#> [1] "GSR" "PRDX2" "TXNRD1" "SOD1" "GCLC" "CAT" "GPX4"
#> [8] "MPO" "PRDX1" "PRDX6" "GCLM" "TXN" "SOD2" "PRDX4"
#> [15] "SELENOS" "PDLIM1" "TXNRD2" "LAMTOR5" "G6PD" "MSRA" "MBP"
#> [22] "SRXN1" "NQO1" "OXSR1" "GLRX2" "HMOX2" "FES" "PFKP"
#> [29] "NDUFB4" "GPX3" "SCAF4" "CDKN2D" "MGST1" "ABCC1" "FTL"
#> [36] "ATOX1" "STK25" "EGLN2" "ERCC2" "SBNO2" "JUNB" "PTPA"
#> [43] "LSP1" "NDUFA6" "HHEX" "GLRX" "NDUFS2" "PRNP" "IPCEF1"
#>
#> $HALLMARK_P53_PATHWAY
#> [1] "CDKN1A" "BTG2" "MDM2" "CCNG1" "FAS" "TOB1"
#> [7] "GADD45A" "PHLDA3" "TAP1" "CDKN2B" "SFN" "ZMAT3"
#> [13] "DDB2" "EI24" "PERP" "DDIT4" "ATF3" "BAX"
#> [19] "SESN1" "FDXR" "PIDD1" "SAT1" "CDKN2A" "AEN"
#> [25] "PPM1D" "FOXO3" "BTG1" "TXNIP" "SLC19A2" "IER3"
#> [31] "TP53" "NOTCH1" "RRAD" "DCXR" "NINJ1" "FOS"
#> [37] "S100A10" "FBXW7" "PLK3" "XPC" "AK1" "TRIAP1"
#> [43] "BAK1" "CCND2" "APAF1" "PDGFA" "NDRG1" "RALGDS"
#> [49] "SERPINB5" "DGKA" "CYFIP2" "KLF4" "IP6K2" "ADA"
#> [55] "TNFSF9" "KLK8" "PRKAB1" "STOM" "SOCS1" "PLK2"
#> [61] "CASP1" "RCHY1" "PCNA" "RPS27L" "RB1" "PPP1R15A"
#> [67] "POLH" "RAB40C" "ERCC5" "CDH13" "DDIT3" "TGFB1"
#> [73] "FUCA1" "H2AW" "TP63" "HSPA4L" "EPHX1" "ABHD4"
#> [79] "H2AJ" "TRAF4" "CTSF" "IER5" "TAX1BP3" "TSC22D1"
#> [85] "RGS16" "HRAS" "PVT1" "ZFP36L1" "SDC1" "WRAP73"
#> [91] "RAP2B" "COQ8A" "PLXNB2" "HEXIM1" "PROCR" "SPHK1"
#> [97] "NOL8" "DEF6" "SP1" "JAG2" "CCP110" "DRAM1"
#> [103] "RPL18" "CEBPA" "KIF13B" "MXD1" "TRAFD1" "OSGIN1"
#> [109] "ANKRA2" "HBEGF" "RAD51C" "ITGB4" "TRIB3" "INHBB"
#> [115] "VAMP8" "VWA5A" "ABAT" "CTSD" "PTPRE" "HINT1"
#> [121] "ALOX15B" "VDR" "ELP1" "WWP1" "NUPR1" "TCN2"
#> [127] "CDKN2AIP" "POM121" "ZNF365" "EPHA2" "JUN" "MAPKAPK3"
#> [133] "SLC7A11" "SERTAD3" "IRAK1" "ABCC5" "UPP1" "CD81"
#> [139] "LIF" "RPL36" "FAM162A" "RNF19B" "CDK5R1" "STEAP3"
#> [145] "PITPNC1" "SLC35D1" "TPRKB" "RRP8" "IL1A" "PMM1"
#> [151] "TPD52L1" "IFI30" "GM2A" "RPS12" "EPS8L2" "TM4SF1"
#> [157] "BLCAP" "MKNK2" "CD82" "RACK1" "ST14" "TCHH"
#> [163] "HDAC3" "CCNK" "RHBDF2" "NUDT15" "TGFA" "ISCU"
#> [169] "LDHB" "TNNI1" "FGF13" "RXRA" "APP" "F2R"
#> [175] "CLCA2" "CGRRF1" "CSRNP2" "ACVR1B" "BMP2" "GPX2"
#> [181] "KRT17" "TM7SF3" "ZBTB16" "PTPN14" "TSPYL2" "SLC3A2"
#> [187] "S100A4" "GLS2" "CCND3" "PRMT2" "NHLH2" "BAIAP2"
#> [193] "RETSAT" "IRAG2" "H1-2" "DNTTIP2" "MXD4" "SEC61A1"
#> [199] "HMOX1" "RAD9A"
#>
#> $HALLMARK_UV_RESPONSE_UP
#> [1] "NXF1" "SLC6A8" "BAK1" "CDC5L" "HSPA2" "POLR2H"
#> [7] "ALAS1" "TUBA4A" "C4BPB" "CCNE1" "EPHX1" "GRPEL1"
#> [13] "ICAM1" "FEN1" "ARRB2" "JUNB" "CTSV" "DGAT1"
#> [19] "ATF3" "CASP3" "RASGRP1" "TMBIM6" "FOS" "TAP1"
#> [25] "E2F5" "RAB27A" "CCND3" "SLC25A4" "SPR" "CDKN2B"
#> [31] "SHOX2" "OLFM1" "IGFBP2" "LYN" "CLTB" "BCL2L11"
#> [37] "LHX2" "NFKBIA" "MSX1" "H2AX" "NR4A1" "GLS"
#> [43] "CDC34" "MMP14" "STK25" "PDAP1" "ABCB1" "BSG"
#> [49] "SELENOW" "IRF1" "RXRB" "TFRC" "PPIF" "CDKN1C"
#> [55] "HLA-F" "CREG1" "APOM" "BMP2" "TGFBRAP1" "NAT1"
#> [61] "CYB5R1" "RRAD" "POLE3" "IL6" "YKT6" "ACAA1"
#> [67] "CLCN2" "AGO2" "SOD2" "PPP1R2" "RHOB" "RET"
#> [73] "PDLIM3" "EPCAM" "DNAJA1" "SULT1A1" "CHKA" "CYP1A1"
#> [79] "ATP6V1F" "CDO1" "ALDOA" "NPTXR" "EIF2S3" "CNP"
#> [85] "GRINA" "BID" "POLG2" "IL6ST" "HYAL2" "FOSB"
#> [91] "MGAT1" "NKX2-5" "PPAT" "FURIN" "MRPL23" "HTR7"
#> [97] "CXCL2" "KLHDC3" "PRPF3" "DNAJB1" "AP2S1" "PSMC3"
#> [103] "TST" "SIGMAR1" "GCH1" "BTG2" "CEBPG" "TARS1"
#> [109] "UROD" "PARP2" "BTG3" "DLG4" "CHRNA5" "NPTX2"
#> [115] "ATP6V1C1" "AQP3" "PLCL1" "NUP58" "TYRO3" "HMOX1"
#> [121] "RPN1" "BTG1" "FMO1" "ASNS" "DDX21" "KCNH2"
#> [127] "COL2A1" "MAOA" "TCHH" "CYB5B" "HSPA13" "GGH"
#> [133] "GAL" "NTRK3" "PPT1" "FGF18" "FKBP4" "STIP1"
#> [139] "EIF5" "ENO2" "GPX3" "PRKACA" "PRKCD" "STARD3"
#> [145] "MARK2" "SLC6A12" "SQSTM1" "PTPRD" "MAPK8IP2" "CDK2"
#> [151] "ONECUT1" "RFC4" "CA2" "TACR3" "AMD1" "HNRNPU"
#> [157] "WIZ" "CCK"
#>
#> $HALLMARK_UV_RESPONSE_DN
#> [1] "TJP1" "NFIB" "TGFBR3" "TFPI" "MMP16" "ABCC1"
#> [7] "MAP2K5" "AGGF1" "PLCB4" "MET" "IRS1" "PTPRM"
#> [13] "AKT3" "SIPA1L1" "NR1D2" "ATRN" "ANXA2" "ADD3"
#> [19] "CDKN1B" "ATXN1" "CAP2" "PRDM2" "TOGARAM1" "SDC2"
#> [25] "SMAD3" "SLC7A1" "GCNT1" "RUNX1" "RND3" "PLPP3"
#> [31] "NR3C1" "YTHDC1" "PPARG" "ADGRL2" "DLG1" "ATP2B4"
#> [37] "NIPBL" "PEX14" "MYC" "RASA2" "FZD2" "BMPR1A"
#> [43] "LPAR1" "PRKCA" "MGMT" "PRKCE" "RXRA" "LTBP1"
#> [49] "LDLR" "RBPMS" "CACNA1A" "RGS4" "COL5A2" "PTPN21"
#> [55] "PRKAR2B" "GJA1" "BCKDHB" "DMAC2L" "SERPINE1" "AMPH"
#> [61] "MIOS" "CITED2" "COL1A2" "INSIG1" "FYN" "WDR37"
#> [67] "ZMIZ1" "PMP22" "CDON" "PIK3R3" "NOTCH2" "SYNJ2"
#> [73] "SMAD7" "MAP1B" "TENT4A" "PTEN" "DYRK1A" "NEK7"
#> [79] "SPOP" "F3" "ERBB2" "GRK5" "DUSP1" "VLDLR"
#> [85] "CAV1" "COL11A1" "CDC42BPA" "CDK13" "SFMBT1" "ADORA2B"
#> [91] "BHLHE40" "COL3A1" "KCNMA1" "SYNE1" "IGF1R" "CELF2"
#> [97] "MTA1" "EFEMP1" "LAMC1" "PHF3" "SCAF8" "VAV2"
#> [103] "PIAS3" "ACVR2A" "NRP1" "MRPS31" "CCN1" "DAB2"
#> [109] "MAGI2" "ANXA4" "COL1A1" "SCHIP1" "DDAH1" "PDGFRB"
#> [115] "ATRX" "KALRN" "TGFBR2" "PTGFR" "ATP2C1" "ARHGEF9"
#> [121] "NFKB1" "MGLL" "FBLN5" "PDLIM5" "MAPK14" "SRI"
#> [127] "INPP4B" "IGFBP5" "ITGB3" "BDNF" "ID1" "SNAI2"
#> [133] "SCN8A" "ATP2B1" "FHL2" "KIT" "APBB2" "PIK3CD"
#> [139] "DLC1" "MT1E" "DBP" "HAS2" "SLC22A18" "ICA1"
#>
#> $HALLMARK_ANGIOGENESIS
#> [1] "VCAN" "POSTN" "FSTL1" "LRPAP1" "STC1" "LPL"
#> [7] "VEGFA" "PF4" "THBD" "FGFR1" "TNFRSF21" "CCND2"
#> [13] "COL5A2" "ITGAV" "SERPINA5" "KCNJ8" "APP" "JAG1"
#> [19] "COL3A1" "SPP1" "NRP1" "OLR1" "PDGFA" "PTK2"
#> [25] "SLCO2A1" "PGLYRP1" "VAV2" "S100A4" "MSX1" "VTN"
#> [31] "TIMP1" "APOH" "PRG2" "JAG2" "LUM" "CXCL6"
#>
#> $HALLMARK_HEME_METABOLISM
#> [1] "ALAS2" "PPOX" "FECH" "HMBS" "GYPB" "ALAD"
#> [7] "RHD" "GYPA" "SELENBP1" "BLVRB" "GYPE" "GYPC"
#> [13] "EPB42" "SLC4A1" "RHCE" "RHAG" "TAL1" "MARCHF8"
#> [19] "SPTB" "UROD" "HBQ1" "DCAF11" "ERMAP" "EIF2AK1"
#> [25] "CPOX" "MPP1" "GLRX5" "TSPAN5" "OSBP2" "ANK1"
#> [31] "NFE2" "AHSP" "SPTA1" "MAP2K3" "BNIP3L" "SLC22A4"
#> [37] "CLIC2" "TRAK2" "GCLC" "KEL" "RANBP10" "TRIM10"
#> [43] "TSPO2" "UROS" "XK" "SNCA" "MARK3" "UBAC1"
#> [49] "CA1" "CA2" "BSG" "FOXO3" "KLF1" "CDC27"
#> [55] "KAT2B" "NARF" "GCLM" "FBXO7" "H1-0" "HEBP1"
#> [61] "HBD" "NUDT4" "FBXO9" "RAD23A" "CROCCP2" "TMCC2"
#> [67] "BLVRA" "GATA1" "RBM38" "PRDX2" "RNF123" "MINPP1"
#> [73] "TNS1" "CTSE" "DMTN" "HDGF" "XPO7" "MKRN1"
#> [79] "SMOX" "TFDP2" "MXI1" "HBB" "MOSPD1" "SLC25A37"
#> [85] "SLC30A1" "ABCB6" "SLC6A8" "TFRC" "RCL1" "TOP1"
#> [91] "EPOR" "TNRC6B" "ACSL6" "GAPVD1" "MGST3" "SLC30A10"
#> [97] "CAT" "BCAM" "HBZ" "ACKR1" "PSMD9" "ISCA1"
#> [103] "PDZK1IP1" "H4C3" "ICAM4" "MOCOS" "ADD1" "FTCD"
#> [109] "ADD2" "BMP2K" "BPGM" "CLCN3" "E2F2" "HAGH"
#> [115] "KDM7A" "OPTN" "RAP1GAP" "CTNS" "NFE2L1" "ELL2"
#> [121] "SLC2A1" "PIGQ" "KLF3" "EPB41" "LAMP2" "TMEM9B"
#> [127] "EZH1" "CTSB" "ATG4A" "MFHAS1" "MYL4" "RNF19A"
#> [133] "BTG2" "SLC11A2" "ADIPOR1" "ASNS" "DCUN1D1" "ALDH1L1"
#> [139] "DCAF10" "YPEL5" "SEC14L1" "USP15" "RIOK3" "SIDT2"
#> [145] "FOXJ2" "TCEA1" "VEZF1" "LPIN2" "PC" "HBBP1"
#> [151] "CDR2" "CCND3" "SLC25A38" "TENT5C" "FBXO34" "BACH1"
#> [157] "NR3C1" "AQP3" "TRIM58" "LMO2" "PICALM" "NCOA4"
#> [163] "GDE1" "SLC6A9" "NNT" "ARHGEF12" "PPP2R5B" "C3"
#> [169] "MARCHF2" "UCP2" "SYNJ1" "FN3K" "ABCG2" "DAAM1"
#> [175] "AGPAT4" "CCDC28A" "GMPS" "ACP5" "SLC10A3" "ALDH6A1"
#> [181] "CIR1" "RBM5" "HTRA2" "IGSF3" "BTRC" "PGLS"
#> [187] "SLC66A2" "SDCBP" "LRP10" "NEK7" "ARL2BP" "ENDOD1"
#> [193] "P4HA2" "HTATIP2" "SLC7A11" "KHNYN" "MBOAT2" "ATP6V0A1"
#> [199] "CAST" "TYR"
#>
#> $HALLMARK_COAGULATION
#> [1] "F2" "PROC" "C1S" "MMP14" "F10" "PLG"
#> [7] "C1R" "SERPINE1" "SERPING1" "C2" "F12" "CFI"
#> [13] "MMP2" "C3" "F9" "CTSO" "TMPRSS6" "MMP9"
#> [19] "PROZ" "MMP1" "CFB" "BMP1" "VWF" "FGA"
#> [25] "F11" "THBD" "FURIN" "MMP11" "F8" "LGMN"
#> [31] "HPN" "CTSB" "MBL2" "F13B" "TIMP1" "CTSV"
#> [37] "MMP8" "A2M" "MMP10" "MASP2" "FGG" "C8A"
#> [43] "PLAU" "ADAM9" "GSN" "CAPN2" "PLAT" "FN1"
#> [49] "CTSH" "OLR1" "SPARC" "RGN" "C8B" "LAMP2"
#> [55] "C9" "PROS1" "CLU" "F2RL2" "CD9" "CFH"
#> [61] "PREP" "LTA4H" "GP9" "DUSP14" "CTSK" "GDA"
#> [67] "CASP9" "APOC1" "CRIP2" "KLK8" "SERPINC1" "ANXA1"
#> [73] "ITIH1" "PRSS23" "FBN1" "MST1" "F3" "KLF7"
#> [79] "CTSE" "ITGB3" "CAPN5" "CSRP1" "KLKB1" "MSRB2"
#> [85] "TFPI2" "MMP3" "MEP1A" "GP1BA" "APOA1" "SERPINA1"
#> [91] "TF" "PEF1" "GNG12" "SIRT2" "COMP" "HTRA1"
#> [97] "MAFF" "LRP1" "PF4" "CPQ" "MMP15" "RABIF"
#> [103] "HRG" "C8G" "APOC2" "SERPINB2" "RAPGEF3" "CPN1"
#> [109] "ITGA2" "RAC1" "DPP4" "WDR1" "THBS1" "FYN"
#> [115] "PDGFB" "SH2B2" "PECAM1" "MMP7" "DUSP6" "CPB2"
#> [121] "S100A13" "CFD" "DCT" "LEFTY2" "ANG" "C1QA"
#> [127] "HMGCS2" "ISCU" "PLEK" "APOC3" "P2RY1" "USP11"
#> [133] "TIMP3" "ACOX2" "HNF4A" "S100A1" "GNB2" "ARF4"
#>
#> $HALLMARK_IL2_STAT5_SIGNALING
#> [1] "SOCS2" "CISH" "PIM1" "IL2RA" "TNFRSF4" "SOCS1"
#> [7] "TNFRSF9" "XBP1" "RRAGD" "HK2" "PHLDA1" "IL2RB"
#> [13] "CTLA4" "NFIL3" "CD83" "IKZF2" "IL10" "TNFRSF18"
#> [19] "DHRS3" "ECM1" "ADAM19" "SLC2A3" "HIPK2" "BATF3"
#> [25] "BHLHE40" "PTGER2" "DENND5A" "ITIH5" "PHTF2" "GADD45B"
#> [31] "NRP1" "NCOA3" "CD79B" "AHR" "TNFRSF1B" "NDRG1"
#> [37] "BCL2L1" "GABARAPL1" "LIF" "TIAM1" "BMPR2" "MAP3K8"
#> [43] "RHOB" "MYC" "S100A1" "ETFBKMT" "CAPG" "ST3GAL4"
#> [49] "PENK" "IRF4" "CST7" "WLS" "TLR7" "IKZF4"
#> [55] "GBP4" "RGS16" "SPP1" "IL13" "SLC29A2" "NFKBIZ"
#> [61] "IL4R" "MXD1" "CSF2" "FAH" "CTSZ" "ITGAE"
#> [67] "MUC1" "MAPKAPK2" "TNFRSF21" "NT5E" "FLT3LG" "CCND2"
#> [73] "TRAF1" "LCLAT1" "IL3RA" "CYFIP1" "BCL2" "FGL2"
#> [79] "PRNP" "EEF1AKMT1" "PUS1" "ITGAV" "NCS1" "DCPS"
#> [85] "AMACR" "FAM126B" "PTH1R" "ODC1" "IGF1R" "PTCH1"
#> [91] "ENO3" "CD81" "MAFF" "EMP1" "CDKN1C" "CAPN3"
#> [97] "IL1R2" "SYT11" "TTC39B" "ANXA4" "BATF" "P4HA1"
#> [103] "GPR65" "SLC1A5" "IGF2R" "CKAP4" "CCR4" "CD44"
#> [109] "P2RX4" "GATA1" "KLF6" "ARL4A" "HOPX" "GPR83"
#> [115] "ITGA6" "CD48" "DRC1" "SELP" "GLIPR2" "SMPDL3A"
#> [121] "PLSCR1" "FURIN" "SERPINB6" "TNFSF11" "GPX4" "LRRC8C"
#> [127] "CCNE1" "CASP3" "SH3BGRL2" "SNX9" "PLEC" "BMP2"
#> [133] "ICOS" "ALCAM" "LTB" "ENPP1" "IL1RL1" "MYO1C"
#> [139] "IFNGR1" "PLIN2" "IL18R1" "AHNAK" "PRKCH" "TNFRSF8"
#> [145] "SYNGR2" "GALM" "POU2F1" "EOMES" "NOP2" "PTRH2"
#> [151] "RHOH" "CDC6" "MYO1E" "CXCL10" "SNX14" "IRF6"
#> [157] "IL10RA" "MAP6" "TNFSF10" "SPRED2" "SELL" "SERPINC1"
#> [163] "CDCP1" "RORA" "COCH" "CSF1" "F2RL2" "UCK2"
#> [169] "CA2" "IFITM3" "UMPS" "HUWE1" "COL6A1" "ABCB1"
#> [175] "RNH1" "IRF8" "GUCY1B1" "AHCY" "PRAF2" "GSTO1"
#> [181] "TWSG1" "CDC42SE2" "PLAGL1" "APLP1" "PLPP1" "SPRY4"
#> [187] "SCN9A" "SHE" "PDCD2L" "CCND3" "LRIG1" "SWAP70"
#> [193] "SLC39A8" "RABGAP1L" "TGM2" "PNP" "AGER" "ETV4"
#> [199] "CD86"
#>
#> $HALLMARK_BILE_ACID_METABOLISM
#> [1] "SCP2" "ABCD3" "SLC27A2" "HSD3B7" "HSD17B4" "AKR1D1"
#> [7] "ABCD2" "PEX1" "CYP8B1" "PNPLA8" "PHYH" "SLC27A5"
#> [13] "CYP7B1" "CYP27A1" "PEX26" "AGXT" "PEX7" "CROT"
#> [19] "CYP39A1" "ABCA3" "CYP7A1" "HACL1" "PIPOX" "PEX6"
#> [25] "SOD1" "GNPAT" "HSD3B1" "ABCA2" "HAO1" "PEX16"
#> [31] "ABCD1" "ACSL1" "MLYCD" "ABCG8" "AQP9" "ISOC1"
#> [37] "NR1H4" "PEX19" "NPC1" "HSD17B11" "AMACR" "CYP46A1"
#> [43] "PEX13" "IDH1" "PEX11A" "HSD17B6" "EPHX2" "PRDX5"
#> [49] "PXMP2" "BBOX1" "FADS2" "ALDH9A1" "APOA1" "OPTN"
#> [55] "GSTK1" "ABCG4" "ALDH8A1" "NR3C2" "ABCA6" "RETSAT"
#> [61] "FADS1" "PECR" "PEX12" "CAT" "GNMT" "ABCA9"
#> [67] "ACSL5" "LONP2" "DHCR24" "ABCA8" "PFKM" "DIO1"
#> [73] "RXRA" "FDXR" "TTR" "KLF1" "SLC29A1" "BCAR3"
#> [79] "LCK" "PEX11G" "SLCO1A2" "ALDH1A1" "SULT1B1" "NR1I2"
#> [85] "GC" "ABCA4" "SLC35B2" "SLC23A1" "NUDT12" "ABCA1"
#> [91] "PAOX" "SLC22A18" "DIO2" "RBP1" "SLC23A2" "ATXN1"
#> [97] "GCLM" "NEDD4" "RXRG" "AR" "BMP6" "SERPINA6"
#> [103] "LIPE" "EFHC1" "IDH2" "IDI1" "CH25H" "ABCA5"
#> [109] "SULT2B1" "SOAT2" "TFCP2L1" "NR0B2"
#>
#> $HALLMARK_PEROXISOME
#> [1] "ABCD3" "ACOT8" "ACOX1" "ACSL1" "ECH1" "ECI2"
#> [7] "EHHADH" "GSTK1" "HSD17B4" "MLYCD" "PEX11A" "RETSAT"
#> [13] "SLC27A2" "PEX13" "PEX14" "SCP2" "HSD3B7" "GNPAT"
#> [19] "ABCD2" "SLC25A17" "PEX2" "ACAA1" "HAO2" "HSD17B11"
#> [25] "CRAT" "PEX11B" "LONP2" "IDH1" "FIS1" "PEX6"
#> [31] "ABCB4" "SOD1" "ABCB1" "ISOC1" "YWHAH" "EPHX2"
#> [37] "ABCD1" "HMGCL" "ACSL5" "ALDH9A1" "DHCR24" "ELOVL5"
#> [43] "NUDT19" "PRDX5" "CTPS1" "IDE" "SLC23A2" "PEX5"
#> [49] "BCL10" "NR1I2" "TSPO" "CNBP" "MSH2" "DHRS3"
#> [55] "DIO1" "SLC25A4" "PRDX1" "IDI1" "HRAS" "MVP"
#> [61] "ABCC8" "CLN6" "CAT" "ACSL4" "IDH2" "ABCC5"
#> [67] "SOD2" "SLC35B2" "FDPS" "ALB" "FADS1" "STS"
#> [73] "SMARCC1" "ITGB1BP1" "SIAH1" "SLC25A19" "CDK7" "RXRG"
#> [79] "ALDH1A1" "UGT2B17" "CADM1" "SERPINA6" "CLN8" "RDH11"
#> [85] "CTBP1" "HSD11B2" "TTR" "ERCC3" "ATXN1" "SULT2B1"
#> [91] "CRABP2" "CRABP1" "TOP2A" "SCGB1A1" "ERCC1" "DLG4"
#> [97] "PABPC1" "FABP6" "ABCB9" "CACNA1B" "SEMA3C" "VPS4B"
#> [103] "CEL" "ESR2"
#>
#> $HALLMARK_ALLOGRAFT_REJECTION
#> [1] "PTPRC" "IL12B" "TGFB1" "IL12A" "CD3E" "CD3D"
#> [7] "CD28" "LYN" "HCLS1" "IL18" "CRTAM" "IFNG"
#> [13] "CD3G" "CD86" "IL10" "UBE2N" "BCL10" "CD4"
#> [19] "LCK" "NCK1" "C2" "HLA-A" "ITGB2" "HLA-DQA1"
#> [25] "CD1D" "CD80" "HLA-DRA" "THY1" "TLR1" "HLA-G"
#> [31] "HLA-DMB" "IL7" "IL4" "TNF" "CD247" "IL2"
#> [37] "HLA-DMA" "STAT1" "IRF4" "SRGN" "INHBA" "TLR3"
#> [43] "ZAP70" "CD74" "CD40" "TRAF2" "B2M" "BCL3"
#> [49] "LTB" "IFNGR1" "CCR5" "CD40LG" "HLA-DOA" "GLMN"
#> [55] "IL6" "HLA-E" "CD2" "CCL5" "FAS" "FASLG"
#> [61] "TLR6" "PF4" "TGFB2" "CD79A" "INHBB" "ELANE"
#> [67] "SPI1" "MAP3K7" "IL15" "CTSS" "CD47" "PRF1"
#> [73] "IL12RB1" "LCP2" "SOCS1" "CDKN2A" "STAT4" "CD7"
#> [79] "HLA-DOB" "CD8A" "ICAM1" "CCL4" "GZMB" "CSF1"
#> [85] "IL11" "STAB1" "IL2RA" "NLRP3" "CCND3" "EIF3A"
#> [91] "SIT1" "IFNAR2" "HDAC9" "CARTPT" "TRAT1" "CCL22"
#> [97] "APBB1" "FYB1" "IL1B" "TIMP1" "RPS19" "JAK2"
#> [103] "KRT1" "WARS1" "IFNGR2" "CCR2" "EREG" "MMP9"
#> [109] "EGFR" "IL16" "CFP" "WAS" "ITGAL" "KLRD1"
#> [115] "RARS1" "TLR2" "CCND2" "IL2RG" "ETS1" "ITK"
#> [121] "NCR1" "MAP4K1" "CCL19" "PSMB10" "RPL39" "EIF3J"
#> [127] "ABCE1" "CD8B" "F2" "ELF4" "LY86" "FCGR2B"
#> [133] "GBP2" "PRKCG" "RPS9" "MTIF2" "GZMA" "AARS1"
#> [139] "CD96" "CSK" "HIF1A" "CCL2" "ICOSLG" "NPM1"
#> [145] "IL4R" "CCL11" "NME1" "FLNA" "GPR65" "ACHE"
#> [151] "EIF3D" "IGSF6" "F2R" "IL13" "TAP1" "DARS1"
#> [157] "IRF7" "ACVR2A" "CXCR3" "PRKCB" "CXCL9" "PTPN6"
#> [163] "NCF4" "UBE2D1" "LIF" "CCR1" "MBL2" "DEGS1"
#> [169] "TPD52" "AKT1" "RIPK2" "IKBKB" "GCNT1" "SOCS5"
#> [175] "IRF8" "TAP2" "EIF4G3" "ABI1" "CCL7" "IL2RB"
#> [181] "BRCA1" "FGR" "IL18RAP" "MRPL3" "CXCL13" "CAPG"
#> [187] "EIF5A" "RPS3A" "GALNT1" "ST8SIA4" "CCL13" "RPL3L"
#> [193] "LY75" "TAPBP" "NOS2" "RPL9" "BCAT1" "IL9"
#> [199] "IL27RA" "DYRK3"
#>
#> $HALLMARK_SPERMATOGENESIS
#> [1] "PDHA2" "TSSK2" "TNP1" "ZPBP" "DPEP3" "ADAM2" "ACTL7B"
#> [8] "GAPDHS" "TUBA3C" "LDHC" "DDX25" "PRM2" "TCP11" "PIAS2"
#> [15] "PAPOLB" "OAZ3" "PHF7" "ODF1" "ACRBP" "YBX2" "CSNK2A2"
#> [22] "NAA11" "TULP2" "ADAD1" "SYCP1" "DDX4" "MLF1" "TEKT2"
#> [29] "SPATA6" "PGK2" "HSPA2" "ACRV1" "CLPB" "CRISP2" "ZC2HC1C"
#> [36] "AKAP4" "CCNA1" "CCT6B" "PACRG" "GSG1" "THEG" "HSPA4L"
#> [43] "CST8" "DCC" "HSPA1L" "GSTM3" "DNAJB8" "IL13RA2" "CAMK4"
#> [50] "LPIN1" "ZC3H14" "COIL" "PHKG2" "KIF2C" "RPL39L" "SLC2A5"
#> [57] "PCSK4" "AURKA" "MLLT10" "NOS1" "ART3" "CCNB2" "NPHP1"
#> [64] "CLGN" "MAST2" "MTOR" "CDKN3" "ZNRF4" "AGFG1" "SNAP91"
#> [71] "PSMG1" "CHFR" "TNP2" "EZH2" "HBZ" "ARL4A" "SLC12A2"
#> [78] "BRAF" "VDAC3" "POMC" "IFT88" "TKTL1" "NEK2" "STAM2"
#> [85] "H1-6" "GMCL1" "MTNR1A" "RFC4" "DBF4" "PRKAR2A" "TTK"
#> [92] "DMC1" "NCAPH" "PEBP1" "CHRM4" "TOPBP1" "SCG5" "NEFH"
#> [99] "MAP7" "BUB1" "SEPTIN4" "PGS1" "NPY5R" "TSN" "CDK1"
#> [106] "SHE" "PARP2" "TNNI3" "PCSK1N" "IDE" "GPR182" "RAD17"
#> [113] "TLE4" "ACE" "SIRT1" "HTR5A" "TALDO1" "NF2" "CLVS1"
#> [120] "CNIH2" "GRM8" "STRBP" "ADCYAP1" "ALOX15" "MEP1B" "SCG3"
#> [127] "GFI1" "ELOVL3" "IL12RB2" "DMRT1" "GAD1" "CFTR" "JAM3"
#> [134] "IP6K1" "HOXB1"
#>
#> $HALLMARK_KRAS_SIGNALING_UP
#> [1] "ANGPTL4" "ITGA2" "SPRY2" "HBEGF" "RBP4" "HSD11B1"
#> [7] "ETV4" "GLRX" "DUSP6" "SCG5" "ETV5" "ITGB2"
#> [13] "AKT2" "PPBP" "G0S2" "GABRA3" "IRF8" "BIRC3"
#> [19] "FGF9" "DCBLD2" "INHBA" "TFPI" "TSPAN1" "ADAM8"
#> [25] "SLPI" "PRKG2" "MMP11" "MMP10" "TMEM158" "TNFAIP3"
#> [31] "PRDM1" "GALNT3" "ETS1" "MMP9" "WNT7A" "IGFBP3"
#> [37] "SPP1" "ETV1" "CLEC4A" "CCND2" "TSPAN7" "ITGBL1"
#> [43] "EMP1" "CDADC1" "KIF5C" "TRIB2" "SDCCAG8" "PCP4"
#> [49] "CFHR2" "ALDH1A2" "NR0B2" "ALDH1A3" "AMMECR1" "SATB1"
#> [55] "GUCY1A1" "CSF2" "APOD" "TOR1AIP2" "CMKLR1" "TMEM176B"
#> [61] "ADGRA2" "LAPTM5" "CD37" "CAB39L" "CIDEA" "ZNF639"
#> [67] "IL1B" "GYPC" "LY96" "FLT4" "SPON1" "BMP2"
#> [73] "PLEK2" "IGF2" "NR1H4" "SNAP25" "ACE" "PRRX1"
#> [79] "C3AR1" "TRAF1" "TLR8" "ID2" "TMEM100" "PLAUR"
#> [85] "GADD45G" "CBX8" "SCN1B" "PTBP2" "NAP1L2" "AKAP12"
#> [91] "PLAT" "SCG3" "ANO1" "IL1RL2" "CXCL10" "ATG10"
#> [97] "YRDC" "HDAC9" "PEG3" "SEMA3B" "TNNT2" "LIF"
#> [103] "CFB" "BTC" "PPP1R15A" "PTPRR" "CCL20" "ARG1"
#> [109] "RETN" "KLF4" "MMD" "PDCD1LG2" "H2BC3" "HOXD11"
#> [115] "TRIB1" "F2RL1" "ANXA10" "TSPAN13" "MTMR10" "CFH"
#> [121] "LAT2" "ERO1A" "RELN" "KCNN4" "TMEM176A" "MAP4K1"
#> [127] "PTGS2" "IL33" "MAFB" "LCP1" "NGF" "CA2"
#> [133] "SERPINA3" "RGS16" "CTSS" "USP12" "CPE" "SPARCL1"
#> [139] "ABCB1" "USH1C" "CSF2RA" "BTBD3" "IL2RG" "DNMBP"
#> [145] "IL10RA" "EREG" "PRELID3B" "EPHB2" "FBXO4" "CROT"
#> [151] "MPZL2" "ANKH" "CBR4" "DOCK2" "GPRC5B" "RABGAP1L"
#> [157] "MALL" "STRN" "ST6GAL1" "PIGR" "VWA5A" "PSMB8"
#> [163] "F13A1" "NRP1" "SOX9" "JUP" "ADGRL4" "ZNF277"
#> [169] "EPB41L3" "PCSK1N" "FUCA1" "PLVAP" "ADAM17" "AVL9"
#> [175] "ADAMDEC1" "HKDC1" "MAP7" "IL7R" "RBM4" "BPGM"
#> [181] "ENG" "GFPT2" "PLAU" "GNG11" "PTCD2" "MAP3K1"
#> [187] "CBL" "CXCR4" "NIN" "IKZF1" "WDR33" "MYCN"
#> [193] "FCER1G" "PECAM1" "CCSER2" "SNAP91" "EVI5" "TNFRSF1B"
#> [199] "GPNMB" "TPH1"
#>
#> $HALLMARK_KRAS_SIGNALING_DN
#> [1] "CDH16" "SPTBN2" "FGFR3" "NOS1" "PDE6B" "SIDT1"
#> [7] "NTF3" "SCN10A" "TAS2R4" "DTNB" "HTR1D" "MAST3"
#> [13] "SLC6A3" "CLDN8" "TGM1" "PCDHB1" "THRB" "YPEL1"
#> [19] "RYR2" "GDNF" "CAMK1D" "AMBN" "LFNG" "SERPINA10"
#> [25] "ALOX12B" "CALCB" "FGGY" "SPRR3" "ATP6V1B1" "EDN1"
#> [31] "UPK3B" "GAMT" "PRODH" "RYR1" "GPR19" "SLC29A3"
#> [37] "EDN2" "GPRC5C" "C5" "ZC2HC1C" "EDAR" "KCNMB1"
#> [43] "TENT5C" "STAG3" "KRT4" "SLC25A23" "INSL5" "GP1BA"
#> [49] "KMT2D" "ABCG4" "MYH7" "BRDT" "PTGFR" "KCNN1"
#> [55] "SELENOP" "IFI44L" "PROP1" "LGALS7" "BMPR1B" "PDK2"
#> [61] "DCC" "SNCB" "COL2A1" "UGT2B17" "NPY4R" "DLK2"
#> [67] "WNT16" "SLC6A14" "ITGB1BP2" "SLC12A3" "YBX2" "CKM"
#> [73] "CPB1" "MAGIX" "ARHGDIG" "CALML5" "KRT1" "MTHFR"
#> [79] "ABCB11" "MYOT" "CELSR2" "KLK7" "THNSL2" "CHRNG"
#> [85] "NR4A2" "CD40LG" "KRT13" "GP2" "CD207" "CCR8"
#> [91] "ZBTB16" "PRKN" "CPA2" "MEFV" "CCNA1" "SLC38A3"
#> [97] "KLK8" "CYP39A1" "KCNQ2" "SLC30A3" "CHST2" "ITIH3"
#> [103] "EGF" "MSH5" "TEX15" "CLPS" "ENTPD7" "CLSTN3"
#> [109] "CYP11B2" "CLDN16" "HSD11B2" "COQ8A" "HNF1A" "FGF22"
#> [115] "TFCP2L1" "OXT" "KCND1" "MACROH2A2" "NRIP2" "RGS11"
#> [121] "CPEB3" "TG" "PTPRJ" "NUDT11" "FSHB" "IDUA"
#> [127] "TNNI3" "GTF3C5" "TFF2" "SSTR4" "COPZ2" "PDCD1"
#> [133] "SLC16A7" "KCNE2" "MFSD6" "KLHDC8A" "CNTFR" "IL5"
#> [139] "NPHS1" "SCGB1A1" "CCDC106" "PAX3" "VPREB1" "TSHB"
#> [145] "CACNA1F" "AKR1B10" "P2RX6" "KRT15" "PAX4" "BTG2"
#> [151] "GPR3" "GRID2" "TCL1A" "PLAG1" "PKP1" "IRS4"
#> [157] "IL12B" "EPHA5" "SOX10" "SNN" "CACNG1" "SPHK2"
#> [163] "IGFBP2" "CAPN9" "TCF7L1" "TGFB2" "SMPX" "LYPD3"
#> [169] "PNMT" "SYNPO" "MX1" "IFNG" "NR6A1" "ACTC1"
#> [175] "RSAD2" "ADRA2C" "BARD1" "HTR1B" "FGF16" "TENM2"
#> [181] "CDKAL1" "SHOX2" "SGK1" "RIBC2" "SKIL" "NGB"
#> [187] "ASB7" "MYO15A" "SLC5A5" "KRT5" "ZNF112" "TFAP2B"
#> [193] "VPS50" "CD80" "ATP4A" "ARPP21" "SERPINB2" "TLX1"
#> [199] "EFHD1" "P2RY4"
#>
#> $HALLMARK_PANCREAS_BETA_CELLS
#> [1] "PAX6" "NEUROD1" "ISL1" "NKX2-2" "PCSK1" "NKX6-1" "SLC2A2"
#> [8] "SEC11A" "DCX" "SPCS1" "FOXA2" "GCK" "MAFB" "INS"
#> [15] "PDX1" "ABCC8" "IAPP" "SRP9" "NEUROG3" "FOXO1" "AKT3"
#> [22] "GCG" "DPP4" "PAX4" "SYT13" "SCGN" "HNF1A" "STXBP1"
#> [29] "CHGA" "VDR" "PCSK2" "INSM1" "SST" "ELP4" "SRPRB"
#> [36] "PAK3" "G6PC2" "PKLR" "LMO2" "SRP14"
#>