Plots UMAP colored by activity level of a module
plot_umap_pathway_activity(umap, PCA_object, module, scaled = T)
Arguments
- umap
UMAP object
- PCA_object
List, output from run_activity_analysis().
- module
Character, module for which you want to plot activity
- scaled
Boolean, by default uses the activity scores scaled between 0 and 1, set to FALSE if you want to use raw PCA scores.
Value
UMAP plots (one by activation mode)