Plots barplot colored by cluster showing distribution of specificity between clusters for each activation mode — plot_pathway_specificity • MAYA

Plots barplot colored by cluster showing distribution of specificity between clusters for each activation mode

plot_pathway_specificity(
  PCA_object,
  module,
  meta,
  annot_name,
  colors_annot = NULL
)

Arguments

PCA_object: List, output from run_activity_analysis().
module: Character, module for which we want to plot activity.
meta: Dataframe containing metadata, with cell labels as rownames.
annot_name: Character, name of the column in meta that should be used to compute homogeneity for.
colors_annot: Vector of colors to use

Value

UMAP plots (one by activation mode)